HigherOrderHMM.Type

java.lang.Object
- java.lang.Enum<HigherOrderHMM.Type>
- - de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models.HigherOrderHMM.Type

All Implemented Interfaces:

Serializable, Comparable<HigherOrderHMM.Type>

Enclosing class:

HigherOrderHMM
```
protected static enum HigherOrderHMM.Type
extends Enum<HigherOrderHMM.Type>
```
This enum defined different types of computations that will be done using the backward algorithm.

Author:

Jens Keilwagen

Enum Constant Summary

Enum Constants
Enum Constant and Description
`BAUM_WELCH` Defines to do Baum-Welch for the given sequence.
`LIKELIHOOD` Defines to compute the likelihood: $P(\underline{x}\|\underline{\lambda}) = \sum_{\underline{u}} P(\underline{x},\underline{u}\|\underline{\lambda})$ .
`VITERBI` Defines to compute the viterbi score: $\max_{\underline{u}} P(\underline{x},\underline{u}\|\underline{\lambda})$ .

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method and Description
`static HigherOrderHMM.Type`	`valueOf(String name)` Returns the enum constant of this type with the specified name.
`static HigherOrderHMM.Type[]`	`values()` Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum
clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait

- Enum Constant Detail
  - LIKELIHOOD
```
public static final HigherOrderHMM.Type LIKELIHOOD
```
    Defines to compute the likelihood: $P(\underline{x}|\underline{\lambda}) = \sum_{\underline{u}} P(\underline{x},\underline{u}|\underline{\lambda})$ .
  - VITERBI
```
public static final HigherOrderHMM.Type VITERBI
```
    Defines to compute the viterbi score: $\max_{\underline{u}} P(\underline{x},\underline{u}|\underline{\lambda})$ .
  - BAUM_WELCH
```
public static final HigherOrderHMM.Type BAUM_WELCH
```
    Defines to do Baum-Welch for the given sequence. In this case the forward matrix has to be filled.
- Method Detail
  - values
```
public static HigherOrderHMM.Type[] values()
```
    Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
```
for (HigherOrderHMM.Type c : HigherOrderHMM.Type.values())
    System.out.println(c);
```
    Returns:
    
    an array containing the constants of this enum type, in the order they are declared
  - valueOf
```
public static HigherOrderHMM.Type valueOf(String name)
```
    Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
    
    Parameters:
    
    name - the name of the enum constant to be returned.
    
    Returns:
    
    the enum constant with the specified name
    
    Throws:
    
    IllegalArgumentException - if this enum type has no constant with the specified name
    
    NullPointerException - if the argument is null

Enum HigherOrderHMM.Type

Enum Constant Summary

Method Summary

Methods inherited from class java.lang.Enum

Methods inherited from class java.lang.Object

Enum Constant Detail

LIKELIHOOD

VITERBI

BAUM_WELCH

Method Detail

values

valueOf