Package de.jstacs.data

Provides classes for the representation of data.

See:
Description

Class Summary

Alphabet	Class for an Alphabet.
Alphabet.AlphabetParameterSet	The super class for the ParameterSet of any Alphabet.
AlphabetContainer	The container for some alphabets used in a sequence, sample, model or ... .
AlphabetContainerParameterSet	Class for the ParameterSet of an AlphabetContainer.
AlphabetContainerParameterSet.AlphabetArrayParameterSet	Class for the parameters of an array of Alphabets of defined length.
AlphabetContainerParameterSet.SectionDefinedAlphabetParameterSet	Class for the parameters of an array of Alphabets where each alphabet may be used for one or more sections of positions.
DiscreteSequenceEnumerator	This class enumerates over all sequences of a specific AlphabetContainer and length.
Sample	This is the class for any sample of sequences.
Sample.ElementEnumerator	This class can be used to have a fast sequential access to a sample.
Sample.WeightedSampleFactory	This class enables you to eliminate sequences that occur more than once in one or more samples.
Sequence	This is the main class for all sequences.
Sequence.CompositeSequence	The class handles composite sequences.
Sequence.SubSequence	This class handles subsequences.

Enum Summary

Sample.PartitionMethod	This enum defines different partition method for a sample.
Sample.WeightedSampleFactory.SortOperation	This enum defines the different types of sort operation that can be performed while creating a Sample.WeightedSampleFactory.

Exception Summary

EmptySampleException	An EmptySampleException will be thrown if no sequence is in a Sample (i.e. the Sample is empty).
WrongLengthException	A WrongLengthException is thrown if a given (sub)sequence length is not correct.

Package de.jstacs.data Description

Provides classes for the representation of data.
The base classes to represent data are Alphabet and AlphabetContainer for representing alphabets, Sequence and its sub-classes to represent continuous and discrete sequences, and Sample to represent samples comprising a set of sequences.