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## Package de.jstacs.data.sequences.annotation

Provides the facilities to annotate `Sequence`s using a number of pre-defined annotation types, or additional implementations of the `SequenceAnnotation` class

See:
Description

Class Summary
CisRegulatoryModuleAnnotation | Annotation for a cis-regulatory module as defined by a set of `MotifAnnotation`s of the motifs in the module.
IntronAnnotation | Annotation class for an intron as defined by a donor and an acceptor splice site.
LocatedSequenceAnnotation | Class for a `SequenceAnnotation` that has a position on the sequence, e.g for transcription start sites or intron-exon junctions.
LocatedSequenceAnnotationWithLength | Class for a `SequenceAnnotation` that has a position on the sequence and a length, e.g. for donor splice sites, exons, or genes.
MotifAnnotation | Class for a `StrandedLocatedSequenceAnnotationWithLength` that is a motif.
SequenceAnnotation | Class for a general annotation of a `Sequence`.
SinglePositionSequenceAnnotation | Class for some annotations that consist mainly of one position on a sequence.
StrandedLocatedSequenceAnnotationWithLength | Class for a `SequenceAnnotation` that has a position, a length, and an orientation on the strand of a `Sequence`.

Enum Summary
SinglePositionSequenceAnnotation.Type | The possible types of a `SinglePositionSequenceAnnotation`.
StrandedLocatedSequenceAnnotationWithLength.Strand | The possible orientations on the strands.

## Package de.jstacs.data.sequences.annotation Description

Provides the facilities to annotate `Sequence`s using a number of pre-defined annotation types, or additional implementations of the `SequenceAnnotation` class.

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