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## Uses of Package
de.jstacs.utils

Packages that use de.jstacs.utils
de.jstacs.algorithms.optimization | Provides classes for different types of algorithms that are not directly linked to the modelling components of Jstacs: Algorithms on graphs, algorithms for numerical optimization, and a basic alignment algorithm.
de.jstacs.classifier | This package provides the framework for any classifier.
de.jstacs.classifier.assessment | This package allows to assess classifiers.
de.jstacs.classifier.scoringFunctionBased | Provides the classes for `Classifier`s that are based on `ScoringFunction`s.
de.jstacs.classifier.utils | Provides some useful classes for working with classifiers
de.jstacs.models.discrete.inhomogeneous | This package contains various inhomogeneous models.
de.jstacs.models.mixture | This package is the super package for any mixture model.
de.jstacs.scoringFunctions | Provides `ScoringFunction`s that can be used in a `ScoreClassifier`.
de.jstacs.scoringFunctions.directedGraphicalModels | Provides `ScoringFunction`s that are equivalent to directed graphical models.
de.jstacs.scoringFunctions.homogeneous | Provides `ScoringFunction`s that are homogeneous, i.e. model probabilities or scores independent of the position within a sequence
de.jstacs.scoringFunctions.mix | Provides `ScoringFunction`s that are mixtures of other `ScoringFunction`s.
de.jstacs.utils | This package contains a bundle of useful classes and interfaces like ...

Classes in de.jstacs.utils used by de.jstacs.algorithms.optimization
SafeOutputStream This class is for any output.
Time This interface is the framework for stopping the time of anything.

Classes in de.jstacs.utils used by de.jstacs.classifier
REnvironment This is an environment class for R that helps you to handle all things in a more gentle way.

Classes in de.jstacs.utils used by de.jstacs.classifier.assessment
ProgressUpdater Interface for supervising the progress of long time processes like cross validation.

Classes in de.jstacs.utils used by de.jstacs.classifier.scoringFunctionBased
SafeOutputStream This class is for any output.

Classes in de.jstacs.utils used by de.jstacs.classifier.utils
REnvironment This is an environment class for R that helps you to handle all things in a more gentle way.

Classes in de.jstacs.utils used by de.jstacs.models.discrete.inhomogeneous
REnvironment This is an environment class for R that helps you to handle all things in a more gentle way.
SafeOutputStream This class is for any output.

Classes in de.jstacs.utils used by de.jstacs.models.mixture
SafeOutputStream This class is for any output.

Classes in de.jstacs.utils used by de.jstacs.scoringFunctions
DoubleList A simple list of primitive type double.
IntList A simple list of primitive type int.

Classes in de.jstacs.utils used by de.jstacs.scoringFunctions.directedGraphicalModels
DoubleList A simple list of primitive type double.
IntList A simple list of primitive type int.

Classes in de.jstacs.utils used by de.jstacs.scoringFunctions.homogeneous
DoubleList A simple list of primitive type double.
IntList A simple list of primitive type int.

Classes in de.jstacs.utils used by de.jstacs.scoringFunctions.mix
DoubleList A simple list of primitive type double.
IntList A simple list of primitive type int.

Classes in de.jstacs.utils used by de.jstacs.utils
ComparableElement This class is a container for any objects that have to be compared.
DefaultProgressUpdater Simple class that implements `ProgressUpdater` and prints the percentage of iterations that is already done on the screen.
NullProgressUpdater This class implements a `ProgressUpdater` doing nothing but forces a crossvalidation that is used with an instance of this class to continue to its end.
ProgressUpdater Interface for supervising the progress of long time processes like cross validation.
Time This interface is the framework for stopping the time of anything.

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