Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES

## Uses of Package
de.jstacs.data.sequences.annotation

Packages that use de.jstacs.data.sequences.annotation
de.jstacs.data | Provides classes for the representation of data.
de.jstacs.data.sequences | Provides classes for representing sequences.
de.jstacs.data.sequences.annotation | Provides the facilities to annotate `Sequence`s using a number of pre-defined annotation types, or additional implementations of the `SequenceAnnotation` class

Classes in de.jstacs.data.sequences.annotation used by de.jstacs.data
SequenceAnnotation Class for a general annotation of a `Sequence`.

Classes in de.jstacs.data.sequences.annotation used by de.jstacs.data.sequences
SequenceAnnotation Class for a general annotation of a `Sequence`.

Classes in de.jstacs.data.sequences.annotation used by de.jstacs.data.sequences.annotation
LocatedSequenceAnnotation Class for a `SequenceAnnotation` that has a position on the sequence, e.g for transcription start sites or intron-exon junctions.
LocatedSequenceAnnotationWithLength Class for a `SequenceAnnotation` that has a position on the sequence and a length, e.g. for donor splice sites, exons, or genes.
MotifAnnotation Class for a `StrandedLocatedSequenceAnnotationWithLength` that is a motif.
SequenceAnnotation Class for a general annotation of a `Sequence`.
SinglePositionSequenceAnnotation Class for some annotations that consist mainly of one position on a sequence.
SinglePositionSequenceAnnotation.Type The possible types of a `SinglePositionSequenceAnnotation`.
StrandedLocatedSequenceAnnotationWithLength Class for a `SequenceAnnotation` that has a position, a length, and an orientation on the strand of a `Sequence`.
StrandedLocatedSequenceAnnotationWithLength.Strand The possible orientations on the strands.

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES