Uses of Class
de.jstacs.results.Result

Packages that use Result

de.jstacs.classifier	This package provides the framework for any classifier.
de.jstacs.classifier.assessment	This package allows to assess classifiers.
de.jstacs.data.sequences.annotation	Provides the facilities to annotate Sequences using a number of pre-defined annotation types, or additional implementations of the SequenceAnnotation class
de.jstacs.results	This package provides classes for results and sets of results.

Uses of Result in de.jstacs.classifier

Subclasses of Result in de.jstacs.classifier

static class

AbstractScoreBasedClassifier.DoubleTableResult This class is for a table of doubles.

Methods in de.jstacs.classifier that return types with arguments of type Result

LinkedList<Result>	MeasureParameters.getAnnotation() Returns the selected parameters and their values as a list of results.
protected LinkedList<? extends Result>	AbstractScoreBasedClassifier.getResults(Sample[] s, MeasureParameters params, boolean exceptionIfNotComputeable, boolean all)
protected LinkedList<? extends Result>	AbstractClassifier.getResults(Sample[] s, MeasureParameters params, boolean exceptionIfNotComputeable, boolean all) This method computes the results for any evaluation of the classifier.

Uses of Result in de.jstacs.classifier.assessment

Methods in de.jstacs.classifier.assessment that return types with arguments of type Result

Collection<Result>	Sampled_RepeatedHoldOutAssessParameterSet.getAnnotation()
Collection<Result>	RepeatedSubSamplingAssessParameterSet.getAnnotation()
Collection<Result>	RepeatedHoldOutAssessParameterSet.getAnnotation()
ArrayList<Result>	KFoldCVAssessParameterSet.getAnnotation()
Collection<Result>	ClassifierAssessmentAssessParameterSet.getAnnotation()

Uses of Result in de.jstacs.data.sequences.annotation

Methods in de.jstacs.data.sequences.annotation that return Result

Result[]

SequenceAnnotation.getAnnotations() Returns the additional annotations of this SequenceAnnotation as given in the constructor.

Constructors in de.jstacs.data.sequences.annotation with parameters of type Result

CisRegulatoryModuleAnnotation(String identifier, MotifAnnotation[] motifs, Result... additionalAnnotation)
Creates a new CisRegulatoryModuleAnnotation from a set of motifs and possibly additional annotations.

IntronAnnotation(String identifier, SinglePositionSequenceAnnotation donor, SinglePositionSequenceAnnotation acceptor, Result... additionalAnnotation)
Creates a new IntronAnnotation from a donor SinglePositionSequenceAnnotation and an acceptor SinglePositionSequenceAnnotation and a set of additional annotations.

LocatedSequenceAnnotation(int position, String type, String identifier, Result... results)
Creates a new LocatedSequenceAnnotation of type type, with identifier identifier, and additional annotation (that does not fit the SequenceAnnotation definitions) result.

LocatedSequenceAnnotation(int position, String type, String identifier, SequenceAnnotation[] annotations, Result... additionalAnnotation)
Creates a new LocatedSequenceAnnotation of type type, with identifier identifier, additional annotation (that does not fit the SequenceAnnotation definitions) result, and sub annotations.

LocatedSequenceAnnotation(String type, String identifier, LocatedSequenceAnnotation[] annotations, Result... additionalAnnotation)
Creates a new LocatedSequenceAnnotation of type type, with identifier identifier, additional annotation (that does not fit the SequenceAnnotation definitions) result, and sub annotations.

LocatedSequenceAnnotationWithLength(int position, int length, String type, String identifier, Result... results)
Creates a new LocatedSequenceAnnotationWithLength of type type, with identifier identifier, and additional annotation (that does not fit the SequenceAnnotation definitions) result.

LocatedSequenceAnnotationWithLength(int position, int length, String type, String identifier, SequenceAnnotation[] annotations, Result... additionalAnnotations)
Creates a new LocatedSequenceAnnotationWithLength of type type, with identifier identifier, additional annotation (that does not fit the SequenceAnnotation definitions) result, and sub-annotations.

LocatedSequenceAnnotationWithLength(String type, String identifier, LocatedSequenceAnnotation[] annotations, Result... additionalAnnotations)
Creates a new LocatedSequenceAnnotationWithLength of type type, with identifier identifier, additional annotation (that does not fit the SequenceAnnotation definitions) result, and sub-annotations.

MotifAnnotation(String identifier, int position, int length, StrandedLocatedSequenceAnnotationWithLength.Strand strandedness, Result... additionalAnnotation)
Creates a new StrandedLocatedSequenceAnnotationWithLength of type type, with identifier identifier, and additional annotation (that does not fit the SequenceAnnotation definitions) additionalAnnotation.

SequenceAnnotation(String type, String identifier, Result result)
Creates a new SequenceAnnotation of type type, with identifier identifier, and additional annotation (that does not fit the SequenceAnnotation definitions) result.

SequenceAnnotation(String type, String identifier, Result[]... results)
Creates a new SequenceAnnotation of type type, with identifier identifier, and additional annotation (that does not fit the SequenceAnnotation definitions) results.

SequenceAnnotation(String type, String identifier, SequenceAnnotation[] subAnnotations, Result... additionalAnnotation)
Creates a new SequenceAnnotation of type type, with identifier identifier, and additional annotation (that does not fit the SequenceAnnotation definitions) additionalAnnotation.

SinglePositionSequenceAnnotation(SinglePositionSequenceAnnotation.Type type, String identifier, int position, Result... additionalAnnotation)
Creates a new SinglePositionSequenceAnnotation of type type, with identifier identifier, position position, and additional annotations additionalAnnotation.

StrandedLocatedSequenceAnnotationWithLength(int position, int length, StrandedLocatedSequenceAnnotationWithLength.Strand strandedness, String type, String identifier, Result... results)
Creates a new StrandedLocatedSequenceAnnotationWithLength of type type, with identifier identifier, and additional annotation (that does not fit the SequenceAnnotation definitions) result.

StrandedLocatedSequenceAnnotationWithLength(int position, int length, StrandedLocatedSequenceAnnotationWithLength.Strand strandedness, String type, String identifier, SequenceAnnotation[] annotations, Result... additionalAnnotations)
Creates a new StrandedLocatedSequenceAnnotationWithLength of type type, with identifier identifier, and additional annotation (that does not fit the SequenceAnnotation definitions) additionalAnnotations, and sub-annotations.

StrandedLocatedSequenceAnnotationWithLength(String type, String identifier, StrandedLocatedSequenceAnnotationWithLength.Strand strandedness, LocatedSequenceAnnotation[] annotations, Result... additionalAnnotations)
Creates a new StrandedLocatedSequenceAnnotationWithLength of type type, with identifier identifier, and additional annotation (that does not fit the SequenceAnnotation definitions) additionalAnnotations, and sub-annotations.

Constructor parameters in de.jstacs.data.sequences.annotation with type arguments of type Result

LocatedSequenceAnnotation(int position, String type, String identifier, Collection<Result> results)
Creates a new LocatedSequenceAnnotation of type type, with identifier identifier, and additional annotation (that does not fit the SequenceAnnotation definitions) result.

LocatedSequenceAnnotationWithLength(int position, int length, String type, String identifier, Collection<Result> results)
Creates a new LocatedSequenceAnnotationWithLength of type type, with identifier identifier, and additional annotation (that does not fit the SequenceAnnotation definitions) result.

SequenceAnnotation(String type, String identifier, Collection<? extends Result> results)
Creates a new SequenceAnnotation of type type, with identifier identifier, and additional annotation (that does not fit the SequenceAnnotation definitions) results.

StrandedLocatedSequenceAnnotationWithLength(int position, int length, StrandedLocatedSequenceAnnotationWithLength.Strand strandedness, String type, String identifier, Collection<Result> results)
Creates a new StrandedLocatedSequenceAnnotationWithLength of type type, with identifier identifier, and additional annotation (that does not fit the SequenceAnnotation definitions) result.

Uses of Result in de.jstacs.results

Subclasses of Result in de.jstacs.results

class	CategoricalResult A class for categorical results (i.e. non-numerical results) for primitives and Strings
class	ImageResult A class for results that are images of the PNG format.
class	ListResult Class for a Result that contains a list or a matrix, respectively, of ResultSets.
class	NumericalResult Class for numerical Result values.
class	SampleResult Result that contains a Sample.
class	SimpleResult Abstract class for a Result with a value of a primitive data type or String.
class	StorableResult Class for results that are Storables.

Fields in de.jstacs.results declared as Result

protected Result[]

ResultSet.results The set of results as an array of Results

Methods in de.jstacs.results that return Result

static Result	Result.createResult(String name, String comment, DataType datatype, Object value) Factory method to create a new Result.
Result	ResultSet.getResultAt(int index) Returns Result number index in this ResultSet.
Result[]	ResultSet.getResults() Returns all internal results.

Methods in de.jstacs.results with parameters of type Result

boolean	Result.isCastableResult(Result test) Returns true if the datatype of test can be casted to that of this instance and both have the same name and comment for the result.
boolean	Result.isComparableResult(Result test) Returns true if test and the current object have the same datatype, name and comment for the result.

Constructors in de.jstacs.results with parameters of type Result

ResultSet(Result result)
Constructs a new ResultSet containing one Result.

ResultSet(Result[]... results)
Constructs a new ResultSet from a 2-dimensional array of Results.

Constructor parameters in de.jstacs.results with type arguments of type Result

ResultSet(Collection<? extends Result> results)
Constructs a new ResultSet from a Collection of type Results.