A B C D E F G H I K L M N O P Q R S T U V W X

H

hasBeenOptimized - Variable in class de.jstacs.classifier.scoringFunctionBased.ScoreClassifier

This boolean indicates whether the classifier has been optimized with the method AbstractClassifier.train(Sample...) or the weighted version.

hasBeenOptimized() - Method in class de.jstacs.classifier.scoringFunctionBased.ScoreClassifier

This method returns true if the classifier has been optimized by a train-method.

hasDefault() - Method in class de.jstacs.parameters.CollectionParameter

Returns true, if this CollectionParameter has a default value.

hasDefaultOrIsSet() - Method in class de.jstacs.data.AlphabetContainerParameterSet.SectionDefinedAlphabetParameterSet

hasDefaultOrIsSet() - Method in class de.jstacs.models.discrete.DGMParameterSet

hasDefaultOrIsSet() - Method in class de.jstacs.parameters.ArrayParameterSet

hasDefaultOrIsSet() - Method in class de.jstacs.parameters.CollectionParameter

Returns true if all the parameters in this collection are either set by the user or have default values

hasDefaultOrIsSet() - Method in class de.jstacs.parameters.FileParameter

hasDefaultOrIsSet() - Method in class de.jstacs.parameters.InstanceParameterSet

hasDefaultOrIsSet() - Method in class de.jstacs.parameters.MultiSelectionCollectionParameter

hasDefaultOrIsSet() - Method in class de.jstacs.parameters.Parameter

Returns true if the parameter either has a default value or the value was set by the user.

hasDefaultOrIsSet() - Method in class de.jstacs.parameters.ParameterSet

Returns true if all parameters in this ParameterSet are either set by the user or have default values.

hasDefaultOrIsSet() - Method in class de.jstacs.parameters.ParameterSetContainer

hasDefaultOrIsSet() - Method in class de.jstacs.parameters.RangeParameter

hasDefaultOrIsSet() - Method in class de.jstacs.parameters.SimpleParameter

hasEveryWhereSameAlphabetSize() - Method in class de.jstacs.data.AlphabetContainer

Returns true if all used alphabets have the same alphabet size, otherwise false.

hashCode() - Method in class de.jstacs.data.Sequence

hasMoreElements() - Method in class de.jstacs.data.DiscreteSequenceEnumerator

hasMoreElements() - Method in class de.jstacs.data.Sample.ElementEnumerator

hasMoreElements() - Method in class de.jstacs.io.SymbolExtractor

hasNext() - Method in class de.jstacs.data.bioJava.SimpleSequenceIterator

hiddenParameter - Variable in class de.jstacs.scoringFunctions.mix.AbstractMixtureScoringFunction

This array contains the hidden parameters of the instance.

hiddenPotential - Variable in class de.jstacs.scoringFunctions.mix.AbstractMixtureScoringFunction

This array contains the hidden potentials of the instance.

HMM0ScoringFunction - Class in de.jstacs.scoringFunctions.homogeneous

This scoring function implements a homogeneous Markov model of order zero (hMM(0)) for a fixed sequence length.

HMM0ScoringFunction(AlphabetContainer, int, double, boolean, boolean) - Constructor for class de.jstacs.scoringFunctions.homogeneous.HMM0ScoringFunction

The main constructor that creates an instance of a homogeneous Markov model of order 0.

HMM0ScoringFunction(StringBuffer) - Constructor for class de.jstacs.scoringFunctions.homogeneous.HMM0ScoringFunction

This is the constructor for Storable.

HMMScoringFunction - Class in de.jstacs.scoringFunctions.homogeneous

This scoring function implements a homogeneous Markov model of arbitrary order for any sequence length.

HMMScoringFunction(AlphabetContainer, int, double, double[], boolean, boolean, int) - Constructor for class de.jstacs.scoringFunctions.homogeneous.HMMScoringFunction

This is the main constructor.

HMMScoringFunction(StringBuffer) - Constructor for class de.jstacs.scoringFunctions.homogeneous.HMMScoringFunction

This is the constructor for Storable.

HomogeneousScoringFunction - Class in de.jstacs.scoringFunctions.homogeneous

This is the main class for all homogeneous ScoringFunctions.

HomogeneousScoringFunction(AlphabetContainer) - Constructor for class de.jstacs.scoringFunctions.homogeneous.HomogeneousScoringFunction

This is the main constructor that creates an instance that models sequence s of arbitrary length.

HomogeneousScoringFunction(AlphabetContainer, int) - Constructor for class de.jstacs.scoringFunctions.homogeneous.HomogeneousScoringFunction

This is the main constructor that creates an instance that models sequence s of a given length.

HomogeneousScoringFunction(StringBuffer) - Constructor for class de.jstacs.scoringFunctions.homogeneous.HomogeneousScoringFunction

This is the constructor for Storable.