de.jstacs.algorithms
Class Alignment.StringAlignment

java.lang.Object
  de.jstacs.algorithms.Alignment.StringAlignment

Enclosing class:

Alignment

public static class Alignment.StringAlignment
extends Object

Class for the representation of an alignment of two strings. It contains the two strings that were aligned and expanded by gap-symbols, and the edit-costs according to the employed Alignment.Costs instance.

Author:

Jan Grau

Constructor Summary

protected

Alignment.StringAlignment(String r1, String r2, double cost) Creates the instance for the two (extended) strings and the edit-costs.

Method Summary

double	getCost() Returns the costs.
String	getFirst() Returns the first string.
String	getSecond() Returns the second string.
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Alignment.StringAlignment

protected Alignment.StringAlignment(String r1,
                                    String r2,
                                    double cost)

Creates the instance for the two (extended) strings and the edit-costs.

Parameters:

r1 - the first string

r2 - the second string

cost - the edit-costs

Method Detail

getCost

public double getCost()

Returns the costs.

Returns:

the costs

getFirst

public String getFirst()

Returns the first string.

Returns:

the first string

getSecond

public String getSecond()

Returns the second string.

Returns:

the second string

toString

public String toString()

Overrides:

toString in class Object