Uses of Interface
de.jstacs.algorithms.Alignment.Costs

Packages that use Alignment.Costs

de.jstacs.algorithms

Provides classes for algorithms on graphs.

Uses of Alignment.Costs in de.jstacs.algorithms

Classes in de.jstacs.algorithms that implement Alignment.Costs

static class

Alignment.SimpleCosts Class for simple costs with costs mismatch for a mismatch, costs start to start a new gap, elong to elongate a gap by one position, and costs of 0 for a match

Constructors in de.jstacs.algorithms with parameters of type Alignment.Costs

Alignment(Sequence s1, Sequence s2, Alignment.Costs costs)
Creates a new Alignment.StringAlignment instance that aligns the sequences s1 and s2 using the costs defined in costs.