de.jstacs.models.discrete.inhomogeneous.parameters
Class IDGMParameterSet

java.lang.Object
  de.jstacs.parameters.ParameterSet
      de.jstacs.parameters.InstanceParameterSet
          de.jstacs.parameters.SequenceScoringParameterSet
              de.jstacs.models.discrete.DGMParameterSet
                  de.jstacs.models.discrete.inhomogeneous.parameters.IDGMParameterSet

All Implemented Interfaces:

RangeIterator, Storable, Cloneable

Direct Known Subclasses:

BayesianNetworkModelParameterSet, FSDAGMParameterSet

public abstract class IDGMParameterSet
extends DGMParameterSet

This is the abstract container of parameters that is root container for all inhomogeneous discrete graphical model parameter containers.

Author:

Jens Keilwagen

Nested Class Summary

Nested classes/interfaces inherited from class de.jstacs.parameters.ParameterSet

ParameterSet.ParameterList

Field Summary

Fields inherited from class de.jstacs.parameters.SequenceScoringParameterSet

alphabet, length

Fields inherited from class de.jstacs.parameters.ParameterSet

errorMessage, parameters, parent, ranged

Constructor Summary

protected	IDGMParameterSet(Class<? extends InhomogeneousDGM> instanceClass) This constructor creates an empty parameter set instance for the specified class.
protected	IDGMParameterSet(Class<? extends InhomogeneousDGM> instanceClass, AlphabetContainer alphabet, int length, double ess, String description) This constructor creates a parameter set instance for the specified class.
protected	IDGMParameterSet(StringBuffer s) The constructor for the Storable interface.

Method Summary

static String

getModelInstanceName(StructureLearner.ModelType model, byte order, StructureLearner.LearningType method, double ess) This method returns a short textual representation of the model instance.

Methods inherited from class de.jstacs.models.discrete.DGMParameterSet

clone, getInstanceName, hasDefaultOrIsSet, loadParameters, setEss

Methods inherited from class de.jstacs.parameters.SequenceScoringParameterSet

equals, fromXML, getAlphabet, getIndex, getLength, getNumberOfParameters, getParameterAt, replaceParametersWithRangedInstance, reset, toXML

Methods inherited from class de.jstacs.parameters.InstanceParameterSet

getInstance, getInstanceClass, getInstanceComment

Methods inherited from class de.jstacs.parameters.ParameterSet

getErrorMessage, getId, getNumberOfValues, getParent, initParameterList, initParameterList, isAtomic, isRanged, makeRanged, next, parametersLoaded, propagateId, recieveId, resetToFirst, setParent, simplify, valuesToString

Methods inherited from class java.lang.Object

finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

IDGMParameterSet

protected IDGMParameterSet(StringBuffer s)
                    throws NonParsableException

The constructor for the Storable interface.

Parameters:

s - the StringBuffer

Throws:

NonParsableException - if the StringBuffer is not parsable

IDGMParameterSet

protected IDGMParameterSet(Class<? extends InhomogeneousDGM> instanceClass)

This constructor creates an empty parameter set instance for the specified class.

Parameters:

instanceClass - the instance class

IDGMParameterSet

protected IDGMParameterSet(Class<? extends InhomogeneousDGM> instanceClass,
                           AlphabetContainer alphabet,
                           int length,
                           double ess,
                           String description)
                    throws Exception

This constructor creates a parameter set instance for the specified class. It sets the AlphabetContainer, the length, the ess and the model description.

Parameters:

instanceClass - the instance class

alphabet - the AlphabetContainer for the model

length - the length of the model

ess - the ess of the model

description - the model description

Throws:

Exception - if something went wrong

Method Detail

getModelInstanceName

public static String getModelInstanceName(StructureLearner.ModelType model,
                                          byte order,
                                          StructureLearner.LearningType method,
                                          double ess)

This method returns a short textual representation of the model instance.

Parameters:

model - the model type

order - the model order

method - the learning method

ess - the used ess

Returns:

a short textual representation of the model instance