Uses of Class
de.jstacs.models.mixture.motif.positionprior.PositionPrior

Packages that use PositionPrior

de.jstacs.models.mixture.motif
de.jstacs.models.mixture.motif.positionprior

Uses of PositionPrior in de.jstacs.models.mixture.motif

Fields in de.jstacs.models.mixture.motif declared as PositionPrior

protected PositionPrior

HiddenMotifMixture.posPrior The prior for the positions.

Constructors in de.jstacs.models.mixture.motif with parameters of type PositionPrior

HiddenMotifMixture(Model[] models, int starts, boolean estimateComponentProbs, double[] componentHyperParams, double[] weights, PositionPrior posPrior, boolean trainOnlyMotifModel, AbstractMixtureModel.Algorithm algorithm, double alpha, double eps, AbstractMixtureModel.Parameterization parametrization, int initialIteration, int stationaryIteration, BurnInTest burnInTest)
Creates a new AbstractMixtureModel.

SingleHiddenMotifMixture(Model motif, Model bg, boolean trainOnlyMotifModel, int starts, double[] componentHyperParams, double[] weights, PositionPrior posPrior, AbstractMixtureModel.Algorithm algorithm, double alpha, double eps, AbstractMixtureModel.Parameterization parametrization, int initialIteration, int stationaryIteration, BurnInTest burnInTest)
Creates a new SingleHiddenMotifMixture.

SingleHiddenMotifMixture(Model motif, Model bg, boolean trainOnlyMotifModel, int starts, double[] componentHyperParams, PositionPrior posPrior, double alpha, double eps, AbstractMixtureModel.Parameterization parametrization)
Creates a single hidden motif mixture using EM and estimating the probability for finding a motif.

SingleHiddenMotifMixture(Model motif, Model bg, boolean trainOnlyMotifModel, int starts, double motifProb, PositionPrior posPrior, double alpha, double eps, AbstractMixtureModel.Parameterization parametrization)
Creates a single hidden motif mixture using EM and fixed probability for finding a motif.

Uses of PositionPrior in de.jstacs.models.mixture.motif.positionprior

Subclasses of PositionPrior in de.jstacs.models.mixture.motif.positionprior

class	GaussianLikePositionPrior This class implements a gaussian like discrete truncated prior.
class	UniformPositionPrior This prior implements a uniform distribution for the start position.

Methods in de.jstacs.models.mixture.motif.positionprior that return PositionPrior

PositionPrior

PositionPrior.clone()