Uses of Class
de.jstacs.data.EmptySampleException

Packages that use EmptySampleException

de.jstacs.data	Provides classes for the representation of data.
de.jstacs.data.sequences	Provides classes for representing sequences.
de.jstacs.models.discrete.homogeneous

Uses of EmptySampleException in de.jstacs.data

Methods in de.jstacs.data that throw EmptySampleException

static Sample	Sample.diff(Sample data, Sample... samples) This method computes the difference between the Sample data and the Samples samples.
static Sample	Sample.intersection(Sample... samples) This method computes the intersection between all elements/Sample s of the array, i.e. it returns a Sample containing only Sequences that are contained in all Samples of the array.
Sample[]	Sample.partition(double p, Sample.PartitionMethod method, int subsequenceLength) This method partitions the elements, i.e. the Sequences, of the Sample in two distinct parts.
Sample[]	Sample.partition(int k, Sample.PartitionMethod method) This method partitions the elements, i.e. the Sequences, of the Sample in k distinct parts.
Sample[]	Sample.partition(Sample.PartitionMethod method, double... percentage) This method partitions the elements, i.e. the Sequences, of the Sample in distinct parts where each part holds the corresponding percentage given in the array percentage.
Sample	Sample.subSampling(int number) Randomly samples elements, i.e.
static Sample	Sample.union(Sample[] s, boolean[] in) This method unites all Samples of the array s regarding the array in.
static Sample	Sample.union(Sample[] s, boolean[] in, int subsequenceLength) This method unites all Samples of the array s regarding the array in and sets the element length in the united Sample to subsequenceLength.

Constructors in de.jstacs.data that throw EmptySampleException

DNASample(String fName)
Creates a new sample of DNA sequence from a FASTA file with file name fName.

DNASample(String fName, char ignore)
Creates a new sample of DNA sequence from a file with file name fName.

DNASample(String fName, char ignore, SequenceAnnotationParser parser)
Creates a new sample of DNA sequence from a file with file name fName using the given parser.

Sample(AlphabetContainer abc, AbstractStringExtractor se)
Creates a new Sample from a StringExtractor using the given AlphabetContainer.

Sample(AlphabetContainer abc, AbstractStringExtractor se, int subsequenceLength)
Creates a new Sample from a StringExtractor using the given AlphabetContainer and all overlapping windows of length subsequenceLength.

Sample(AlphabetContainer abc, AbstractStringExtractor se, String delim)
Creates a new Sample from a StringExtractor using the given AlphabetContainer and a delimiter delim.

Sample(AlphabetContainer abc, AbstractStringExtractor se, String delim, int subsequenceLength)
Creates a new Sample from a StringExtractor using the given AlphabetContainer, the given delimiter delim and all overlapping windows of length subsequenceLength.

Sample(String annotation, Sequence... seqs)
Creates a new Sample from an array of Sequences and a given annotation.

Uses of EmptySampleException in de.jstacs.data.sequences

Methods in de.jstacs.data.sequences that throw EmptySampleException

static Sample

SparseSequence.getSample(AlphabetContainer con, AbstractStringExtractor se) This method allows to create a Sample containing SparseSequences.

Uses of EmptySampleException in de.jstacs.models.discrete.homogeneous

Methods in de.jstacs.models.discrete.homogeneous that throw EmptySampleException

Sample

HomogeneousModel.emitSample(int no, int... length) Creates a Sample of a given number of Sequences from a trained homogeneous model.