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## Uses of Interface
de.jstacs.algorithms.Alignment.Costs

Packages that use Alignment.Costs
de.jstacs.algorithms | Provides classes for algorithms on graphs.

Uses of Alignment.Costs in de.jstacs.algorithms

Classes in de.jstacs.algorithms that implement Alignment.Costs
`static class` | `Alignment.SimpleCosts` Class for simple costs with costs `mismatch` for a mismatch, costs `start` to start a new gap, costs `elong` to elongate a gap by one position and costs of `0` for a match.

Constructors in de.jstacs.algorithms with parameters of type Alignment.Costs
`Alignment(Sequence s1, Sequence s2, Alignment.Costs costs)` Creates a new `Alignment.StringAlignment` instance that aligns the sequences `s1` and `s2` using the costs defined in `costs`.

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