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## Package de.jstacs.scoringFunctions.mix.motifSearch

Class Summary
CDFOfNormal | This class enables to compute the The code is a simplified version of pnorm.c from R (version 2.8.0 downloaded at 07.12.2008 about 19:30).
DurationScoringFunction | This class is the super class for all one dimensional position scoring functions that can be used as durations for semi Markov models.
HiddenMotifsMixture | This class handles mixtures with at least one hidden motif.
MixtureDuration | This class implements a mixture of `DurationScoringFunction`s.
PositionScoringFunction | This class implements a position scoring function that enables the user to get a score without using a Sequence object.
SkewNormalLikeScoringFunction | This class implements a skew normal like discrete truncated distribution.
UniformDurationScoringFunction | This scoring function implements a uniform distribution for positions.

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