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## Uses of Class
de.jstacs.data.sequences.annotation.LocatedSequenceAnnotation

Packages that use LocatedSequenceAnnotation
de.jstacs.data.sequences.annotation | Provides the facilities to annotate `Sequence`s using a number of pre-defined annotation types, or additional implementations of the `SequenceAnnotation` class

Uses of LocatedSequenceAnnotation in de.jstacs.data.sequences.annotation

Subclasses of LocatedSequenceAnnotation in de.jstacs.data.sequences.annotation
`class` | `IntronAnnotation` Annotation class for an intron as defined by a donor and an acceptor splice site.
`class` | `LocatedSequenceAnnotationWithLength` Class for a `SequenceAnnotation` that has a position on the sequence and a length, e.g. for donor splice sites, exons or genes.
`class` | `MotifAnnotation` Class for a `StrandedLocatedSequenceAnnotationWithLength` that is a motif.
`class` | `SinglePositionSequenceAnnotation` Class for some annotations that consist mainly of one position on a sequence.
`class` | `StrandedLocatedSequenceAnnotationWithLength` Class for a `SequenceAnnotation` that has a position, a length and an orientation on the strand of a `Sequence`.

Constructors in de.jstacs.data.sequences.annotation with parameters of type LocatedSequenceAnnotation
`LocatedSequenceAnnotation(String type, String identifier, LocatedSequenceAnnotation[] annotations, Result... additionalAnnotation)` Creates a new `LocatedSequenceAnnotation` of type `type` with identifier `identifier`, additional annotation (that does not fit the `SequenceAnnotation` definitions) given as an array of `Result`s `additionalAnnotation` and sub-annotations `annotations`.
`LocatedSequenceAnnotationWithLength(String type, String identifier, LocatedSequenceAnnotation[] annotations, Result... additionalAnnotations)` Creates a new `LocatedSequenceAnnotationWithLength` of type `type` with identifier `identifier`, additional annotation (that does not fit the `SequenceAnnotation` definitions) given as an array of `Result`s `additionalAnnotations` and sub-annotations `annotations`.
`StrandedLocatedSequenceAnnotationWithLength(String type, String identifier, StrandedLocatedSequenceAnnotationWithLength.Strand strandedness, LocatedSequenceAnnotation[] annotations, Result... additionalAnnotations)` Creates a new `StrandedLocatedSequenceAnnotationWithLength` of type `type` with identifier `identifier`, additional annotation (that does not fit the `SequenceAnnotation` definitions) given as an array of `Result`s `additionalAnnotations` and sub-annotations `annotations`.

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