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## Package de.jstacs.algorithms

Provides classes for algorithms on graphs.

See:
Description

Interface Summary
Alignment.Costs | The general interface for the costs of an alignment.

Class Summary
Alignment | Class for gapped global alignments using the extended Needleman-Wunsch algorithm.
Alignment.SimpleCosts | Class for simple costs with costs `mismatch` for a mismatch, costs `start` to start a new gap, costs `elong` to elongate a gap by one position and costs of `0` for a match.
Alignment.StringAlignment | Class for the representation of an alignment of two `String`s.

Enum Summary
Alignment.Costs.Direction | The direction of the predecessor in the DP (dynamic programming)-matrix.

## Package de.jstacs.algorithms Description

Provides classes for algorithms on graphs. This includes maximum spanning trees of directed and undirected weighted graphs.

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