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## de.jstacs.classifier.scoringFunctionBased.msp
Class MSPClassifier

    java.lang.Object
      de.jstacs.classifier.AbstractClassifier
          de.jstacs.classifier.AbstractScoreBasedClassifier
              de.jstacs.classifier.scoringFunctionBased.ScoreClassifier
                  de.jstacs.classifier.scoringFunctionBased.gendismix.GenDisMixClassifier
                      de.jstacs.classifier.scoringFunctionBased.msp.MSPClassifier

All Implemented Interfaces:
  Storable, Cloneable

    public class MSPClassifier

extends GenDisMixClassifier

This class implements a classifier that allows the training via MCL or MSP principle.

Author:
  Jens Keilwagen, Jan Grau

Nested Class Summary

Nested classes/interfaces inherited from class de.jstacs.classifier.AbstractScoreBasedClassifier
`AbstractScoreBasedClassifier.DoubleTableResult`

Field Summary

Fields inherited from class de.jstacs.classifier.scoringFunctionBased.gendismix.GenDisMixClassifier
`beta, function, prior`

Fields inherited from class de.jstacs.classifier.scoringFunctionBased.ScoreClassifier
`hasBeenOptimized, NOT_TRAINED_VALUE, params, score, sostream`

Constructor Summary
`MSPClassifier(GenDisMixClassifierParameterSet params, LogPrior prior, double lastScore, ScoringFunction... score)` This constructor that creates a new `MSPClassifier` from a given parameter set, a prior and `ScoringFunction`s for the classes.
`MSPClassifier(GenDisMixClassifierParameterSet params, LogPrior prior, ScoringFunction... score)` The default constructor that creates a new `MSPClassifier` from a given parameter set, a prior and `ScoringFunction`s for the classes.
`MSPClassifier(GenDisMixClassifierParameterSet params, ScoringFunction... score)` This convenience constructor creates an `MSPClassifier` that used MCL principle for training.
`MSPClassifier(StringBuffer xml)` This is the constructor for `Storable`.

Method Summary
`String` | `getInstanceName()` Returns a short description of the classifier.
`protected String` | `getXMLTag()` Returns the `String` that is used as tag for the XML representation of the classifier.

Methods inherited from class de.jstacs.classifier.scoringFunctionBased.gendismix.GenDisMixClassifier
`clone, create, extractFurtherClassifierInfosFromXML, getClassOfParameterSet, getFunction, getFurtherClassifierInfos, getNumberOfThreads, setNumberOfThreads, setPrior, setWeights, toString`

Methods inherited from class de.jstacs.classifier.scoringFunctionBased.ScoreClassifier
`createStructure, createStructure, doOptimization, getClassifierAnnotation, getLastScore, getNumericalCharacteristics, getScore, getScoringFunction, getScoringFunctions, hasBeenOptimized, isTrained, setOutputStream, train`

Methods inherited from class de.jstacs.classifier.AbstractScoreBasedClassifier
`check, check, classify, classify, createDefaultClassWeights, getClassWeight, getClassWeights, getNumberOfClasses, getPValue, getPValue, getResults, getScore, getScores, setClassWeights, setClassWeights, setThresholdClassWeights, test`

Methods inherited from class de.jstacs.classifier.AbstractClassifier
`classify, evaluate, evaluateAll, getAlphabetContainer, getCharacteristics, getClassificationRate, getLength, getMeasuresForEvaluate, getMeasuresForEvaluateAll, setNewAlphabetContainerInstance, toXML, train`

Methods inherited from class java.lang.Object
`equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait`

Constructor Detail

### MSPClassifier

    public MSPClassifier(GenDisMixClassifierParameterSet params,
                         ScoringFunction... score)
                  throws CloneNotSupportedException

  This convenience constructor creates an `MSPClassifier` that used MCL principle for training.

  Parameters:
    `params` - the parameter set for the classifier
    `score` - the `ScoringFunction`s for the classes
  Throws:
    `CloneNotSupportedException` - if at least one `ScoringFunction` could not be cloned
  See Also:
    `DoesNothingLogPrior`, `MSPClassifier(GenDisMixClassifierParameterSet, LogPrior, ScoringFunction...)`

### MSPClassifier

    public MSPClassifier(GenDisMixClassifierParameterSet params,
                         LogPrior prior,
                         ScoringFunction... score)
                  throws CloneNotSupportedException

  The default constructor that creates a new `MSPClassifier` from a given parameter set, a prior and `ScoringFunction`s for the classes.

  Parameters:
    `params` - the parameter set for the classifier
    `prior` - the prior that shall be used; the learning principle depends on the prior: if the prior is `null` or `DoesNothingLogPrior` then MCL is used otherwise MSP
    `score` - the `ScoringFunction`s for the classes
  Throws:
    `CloneNotSupportedException` - if at least one `ScoringFunction` could not be cloned
  See Also:
    `MSPClassifier(GenDisMixClassifierParameterSet, LogPrior, double, ScoringFunction...)`, `ScoreClassifier.NOT_TRAINED_VALUE`, `GenDisMixClassifier.setPrior(LogPrior)`

### MSPClassifier

    public MSPClassifier(GenDisMixClassifierParameterSet params,
                         LogPrior prior,
                         double lastScore,
                         ScoringFunction... score)
                  throws CloneNotSupportedException

  This constructor that creates a new `MSPClassifier` from a given parameter set, a prior and `ScoringFunction`s for the classes. Additionally, the value `lastScore` can be set to determine the return value of `ScoreClassifier.getLastScore()`. This might be useful if the parameters of the classifier are determined by an external procedure.

  Parameters:
    `params` - the parameter set for the classifier
    `prior` - the prior that shall be used; the learning principle depends on the prior: if the prior is `null` or `DoesNothingLogPrior` then MCL is used otherwise MSP
    `lastScore` - the score of the last optimization
    `score` - the `ScoringFunction`s for the classes
  Throws:
    `CloneNotSupportedException` - if at least one `ScoringFunction` could not be cloned
  See Also:
    `GenDisMixClassifier.GenDisMixClassifier(GenDisMixClassifierParameterSet, LogPrior, LearningPrinciple, de.jstacs.scoringFunctions.NormalizableScoringFunction...)`, `LearningPrinciple.MSP`, `GenDisMixClassifier.setPrior(LogPrior)`

### MSPClassifier

    public MSPClassifier(StringBuffer xml)
                  throws NonParsableException

  This is the constructor for `Storable`.

  Parameters:
    `xml` - the xml representation
  Throws:
    `NonParsableException` - if the representation could not be parsed.

Method Detail

### getXMLTag

    protected String getXMLTag()

  Description copied from class: `AbstractClassifier`
  Returns the `String` that is used as tag for the XML representation of the classifier. This method is used by the methods `AbstractClassifier.fromXML(StringBuffer)` and `AbstractClassifier.toXML()`.

  Overrides:
    `getXMLTag` in class `GenDisMixClassifier`
  Returns:
    the `String` that is used as tag for the XML representation of the classifier

### getInstanceName

    public String getInstanceName()

  Description copied from class: `AbstractClassifier`
  Returns a short description of the classifier.

  Overrides:
    `getInstanceName` in class `GenDisMixClassifier`
  Returns:
    a short description of the classifier

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