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## Uses of Class
de.jstacs.data.sequences.WrongSequenceTypeException

Packages that use WrongSequenceTypeException
de.jstacs.data | Provides classes for the representation of data.
de.jstacs.data.sequences | Provides classes for representing sequences.
de.jstacs.models.discrete.homogeneous |

Uses of WrongSequenceTypeException in de.jstacs.data

Methods in de.jstacs.data that throw WrongSequenceTypeException
`double[]` | `DinucleotideProperty.getProperty(Sequence original)` Computes this dinucleotide property for all overlapping twomers in `original` and returns the result as a `double` array of length `original.getLength()-1`
`double[]` | `DinucleotideProperty.getProperty(Sequence original, DinucleotideProperty.Smoothing smoothing)` Computes this dinucleotide property for all overlapping twomers in `original`, smoothes the result using `smoothing`, and returns the smoothed property as a `double` array.
`Sequence` | `DinucleotideProperty.getPropertyAsSequence(Sequence original)` Computes this dinucleotide property for all overlapping twomers in `original` and returns the result as a `Sequence` of length `original.getLength()-1`
`Sequence` | `DinucleotideProperty.getPropertyAsSequence(Sequence original, DinucleotideProperty.Smoothing smoothing)` Computes this dinucleotide property for all overlapping twomers in `original`, smoothes the result using `smoothing`, and returns the smoothed property as a `Sequence`.
`static Sample` | `DinucleotideProperty.getSampleForProperty(Sample original, DinucleotideProperty... properties)` Creates a new `Sample` by converting each `Sequence` in `original` to the `DinucleotideProperty`s `properties` and setting these as `ReferenceSequenceAnnotation` of each original sequence.
`static Sample` | `DinucleotideProperty.getSampleForProperty(Sample original, DinucleotideProperty.Smoothing smoothing, boolean addToAnnotation, DinucleotideProperty... properties)` Creates a new `Sample` by converting each `Sequence` in `original` to the `DinucleotideProperty`s `properties` and adding or setting these as `ReferenceSequenceAnnotation` of each original sequence.
`static Sample` | `DinucleotideProperty.getSampleForProperty(Sample original, DinucleotideProperty.Smoothing smoothing, boolean originalAsAnnotation, DinucleotideProperty property)` Creates a new `Sample` by converting each `Sequence` in `original` to the `DinucleotideProperty` `property` using the `DinucleotideProperty.Smoothing` smoothing.
`static Sample` | `DinucleotideProperty.getSampleForProperty(Sample original, DinucleotideProperty property)` Creates a new `Sample` by converting each `Sequence` in `original` to the `DinucleotideProperty` `property`.

Uses of WrongSequenceTypeException in de.jstacs.data.sequences

Methods in de.jstacs.data.sequences that throw WrongSequenceTypeException
`static Sample` | `SparseSequence.getSample(AlphabetContainer con, AbstractStringExtractor... se)` This method allows to create a `Sample` containing `SparseSequence`s.

Constructors in de.jstacs.data.sequences that throw WrongSequenceTypeException
`ArbitrarySequence(AlphabetContainer alphabetContainer, double[] content)` Creates a new `ArbitrarySequence` from an array of `double`-encoded alphabet symbols.
`ArbitrarySequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, String sequence, String delim)` Creates a new `ArbitrarySequence` from a `String` representation using the delimiter `delim`.
`ArbitrarySequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, SymbolExtractor extractor)` Creates a new `ArbitrarySequence` from a `SymbolExtractor`.
`ArbitrarySequence(AlphabetContainer alphabetContainer, String sequence)` Creates a new `ArbitrarySequence` from a `String` representation using the default delimiter.
`ByteSequence(AlphabetContainer alphabetContainer, byte[] content)` Creates a new `ByteSequence` from an array of `byte`- encoded alphabet symbols.
`ByteSequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, String sequence, String delim)` Creates a new `ByteSequence` from a `String` representation using the delimiter `delim`.
`ByteSequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, SymbolExtractor extractor)` Creates a new `ByteSequence` from a `SymbolExtractor`.
`ByteSequence(AlphabetContainer alphabetContainer, String sequence)` Creates a new `ByteSequence` from a `String` representation using the default delimiter.
`IntSequence(AlphabetContainer alphabetContainer, int... content)` Creates a new `IntSequence` from an array of `int`- encoded alphabet symbols.
`IntSequence(AlphabetContainer alphabetContainer, int[] content, int start, int length)` Creates a new `IntSequence` from a part of the array of `int`- encoded alphabet symbols.
`IntSequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, String sequence, String delim)` Creates a new `IntSequence` from a `String` representation using the delimiter `delim`.
`IntSequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, SymbolExtractor extractor)` Creates a new `IntSequence` from a `SymbolExtractor`.
`IntSequence(AlphabetContainer alphabetContainer, String sequence)` Creates a new `IntSequence` from a `String` representation using the default delimiter.
`ShortSequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, String sequence, String delim)` Creates a new `ShortSequence` from a `String` representation using the delimiter `delim`.
`ShortSequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, SymbolExtractor extractor)` Creates a new `ShortSequence` from a `SymbolExtractor`.
`ShortSequence(AlphabetContainer alphabetContainer, short[] content)` Creates a new `ShortSequence` from an array of `short`- encoded alphabet symbols.
`ShortSequence(AlphabetContainer alphabetContainer, String sequence)` Creates a new `ShortSequence` from a `String` representation using the default delimiter.
`SparseSequence(AlphabetContainer alphCon, String seq)` Creates a new `SparseSequence` from a `String` representation.
`SparseSequence(AlphabetContainer alphCon, SymbolExtractor se)` Creates a new `SparseSequence` from a `SymbolExtractor`.

Uses of WrongSequenceTypeException in de.jstacs.models.discrete.homogeneous

Methods in de.jstacs.models.discrete.homogeneous that throw WrongSequenceTypeException
`Sample` | `HomogeneousModel.emitSample(int no, int... length)` Creates a `Sample` of a given number of `Sequence`s from a trained homogeneous model.
`protected abstract Sequence` | `HomogeneousModel.getRandomSequence(Random r, int length)` This method creates a random `Sequence` from a trained homogeneous model.
`protected Sequence` | `HomogeneousMM.getRandomSequence(Random r, int length)`

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