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## Uses of Package
de.jstacs.data.sequences

Packages that use de.jstacs.data.sequences
de.jstacs.data | Provides classes for the representation of data.
de.jstacs.data.sequences | Provides classes for representing sequences.
de.jstacs.models.discrete.homogeneous |

Classes in de.jstacs.data.sequences used by de.jstacs.data
WrongSequenceTypeException This `Exception` indicates that the type of the sequence ( `ByteSequence`, `ShortSequence`, ...) is not suitable for a given `AlphabetContainer`.

Classes in de.jstacs.data.sequences used by de.jstacs.data.sequences
ArbitrarySequence This class is for any continuous or hybrid sequence.
ByteSequence This class is for sequences with the alphabet symbols encoded as `byte`s and can therefore be used for discrete `AlphabetContainer`s with alphabets that use only few symbols.
DiscreteSequence This is the super class of discrete sequences.
IntSequence This class is for sequences with the alphabet symbols encoded as `int`s and can therefore be used for discrete `AlphabetContainer`s with alphabets that use a huge number of symbols.
MultiDimensionalDiscreteSequence This class is for multidimensional sequences that can be used, for instance, for phylogenetic footprinting.
PermutedSequence This class is for permuted sequences.
ShortSequence This class is for sequences with the alphabet symbols encoded as `shorts`s and can therefore be used for discrete `AlphabetContainer`s with alphabets that use many different symbols.
SimpleDiscreteSequence This is the main class for any discrete sequence.
SparseSequence This class is an implementation for sequences on one alphabet with length 4.
WrongSequenceTypeException This `Exception` indicates that the type of the sequence ( `ByteSequence`, `ShortSequence`, ...) is not suitable for a given `AlphabetContainer`.

Classes in de.jstacs.data.sequences used by de.jstacs.models.discrete.homogeneous
WrongSequenceTypeException This `Exception` indicates that the type of the sequence ( `ByteSequence`, `ShortSequence`, ...) is not suitable for a given `AlphabetContainer`.

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