Uses of Class
de.jstacs.utils.Pair

Packages that use Pair

de.jstacs.data	Provides classes for the representation of data.
de.jstacs.motifDiscovery	This package provides the framework including the interface for any de novo motif discoverer

Uses of Pair in de.jstacs.data

Methods in de.jstacs.data that return Pair

Pair<Sample[],double[][]>	Sample.partition(double[] sequenceWeights, int k, Sample.PartitionMethod method) This method partitions the elements, i.e. the Sequences, of the Sample and the corresponding weights in k distinct parts.
Pair<Sample[],double[][]>	Sample.partition(double[] sequenceWeights, Sample.PartitionMethod method, double... percentage) This method partitions the elements, i.e. the Sequences, of the Sample and the corresponding weights in distinct parts where each part holds the corresponding percentage given in the array percentage.

Uses of Pair in de.jstacs.motifDiscovery

Methods in de.jstacs.motifDiscovery that return Pair

static Pair<Sequence,BitSet[]>[]

KMereStatistic.getKmereSequenceStatistic(boolean bothStrands, int maxMismatch, HashSet<Sequence> filter, Sample... data) This method enables the user to get a statistic for a set of k-mers.