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Packages that use DurationScoringFunction | |
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de.jstacs.scoringFunctions.directedGraphicalModels | Provides ScoringFunction s that are equivalent to directed graphical models. |
de.jstacs.scoringFunctions.mix.motifSearch |
Uses of DurationScoringFunction in de.jstacs.scoringFunctions.directedGraphicalModels |
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Constructors in de.jstacs.scoringFunctions.directedGraphicalModels with parameters of type DurationScoringFunction | |
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MutableMarkovModelScoringFunction(AlphabetContainer alphabet,
int length,
double ess,
boolean plugInParameters,
InhomogeneousMarkov structureMeasure,
DurationScoringFunction lengthPenalty)
This constructor creates an instance with an prior for the modeled length. |
Uses of DurationScoringFunction in de.jstacs.scoringFunctions.mix.motifSearch |
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Subclasses of DurationScoringFunction in de.jstacs.scoringFunctions.mix.motifSearch | |
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class |
SkewNormalLikeScoringFunction
This class implements a skew normal like discrete truncated distribution. |
class |
UniformDurationScoringFunction
This scoring function implements a uniform distribution for positions. |
Constructors in de.jstacs.scoringFunctions.mix.motifSearch with parameters of type DurationScoringFunction | |
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HiddenMotifsMixture(boolean type,
int length,
int starts,
boolean plugIn,
HomogeneousScoringFunction bg,
NormalizableScoringFunction[] motif,
DurationScoringFunction[] posPrior,
boolean plugInBg)
This constructor creates an instance of HiddenMotifsMixture that allows to have one site of the specified motifs in a Sequence . |
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HiddenMotifsMixture(boolean type,
int length,
int starts,
boolean plugIn,
HomogeneousScoringFunction bg,
NormalizableScoringFunction[] motif,
DurationScoringFunction[] posPrior,
double sign,
boolean plugInBg)
This constructor creates an instance of HiddenMotifsMixture that allows to have one site of the specified motifs in a Sequence . |
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HiddenMotifsMixture(boolean type,
int length,
int starts,
boolean plugIn,
HomogeneousScoringFunction bg,
NormalizableScoringFunction motif,
DurationScoringFunction posPrior,
boolean plugInBg)
This constructor creates an instance of HiddenMotifsMixture that is either an OOPS or a ZOOPS model depending on the chosen type . |
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HiddenMotifsMixture(boolean type,
int length,
int starts,
boolean plugIn,
HomogeneousScoringFunction bg,
NormalizableScoringFunction motif,
DurationScoringFunction posPrior,
double sign,
boolean plugInBg)
This constructor creates an instance of HiddenMotifsMixture that is either an OOPS or a ZOOPS model depending on the chosen type . |
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