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Packages that use de.jstacs.scoringFunctions | |
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de.jstacs.classifier.scoringFunctionBased | Provides the classes for Classifier s that are based on ScoringFunction s. |
de.jstacs.classifier.scoringFunctionBased.cll | Provides the implementation of the log conditional likelihood as an OptimizableFunction and a classifier that uses log conditional likelihood or supervised posterior
to learn the parameters of a set of ScoringFunctions |
de.jstacs.classifier.scoringFunctionBased.logPrior | Provides a general definition of a parameter log-prior and a number of implementations of Laplace and Gaussian priors |
de.jstacs.motifDiscovery | This package provides the framework including the interface for any de novo motif discoverer |
de.jstacs.scoringFunctions | Provides ScoringFunction s that can be used in a ScoreClassifier . |
de.jstacs.scoringFunctions.directedGraphicalModels | Provides ScoringFunction s that are equivalent to directed graphical models. |
de.jstacs.scoringFunctions.homogeneous | Provides ScoringFunction s that are homogeneous, i.e. model probabilities or scores independent of the position within a sequence |
de.jstacs.scoringFunctions.mix | Provides ScoringFunction s that are mixtures of other ScoringFunction s. |
de.jstacs.scoringFunctions.mix.motifSearch |
Classes in de.jstacs.scoringFunctions used by de.jstacs.classifier.scoringFunctionBased | |
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ScoringFunction
This interface is the main part of any ScoreClassifier . |
Classes in de.jstacs.scoringFunctions used by de.jstacs.classifier.scoringFunctionBased.cll | |
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ScoringFunction
This interface is the main part of any ScoreClassifier . |
Classes in de.jstacs.scoringFunctions used by de.jstacs.classifier.scoringFunctionBased.logPrior | |
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NormalizableScoringFunction
The interface for normalizable ScoringFunction s. |
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ScoringFunction
This interface is the main part of any ScoreClassifier . |
Classes in de.jstacs.scoringFunctions used by de.jstacs.motifDiscovery | |
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ScoringFunction
This interface is the main part of any ScoreClassifier . |
Classes in de.jstacs.scoringFunctions used by de.jstacs.scoringFunctions | |
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AbstractNormalizableScoringFunction
This class is the main part of any ScoreClassifier . |
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IndependentProductScoringFunction
This class enables the user to model parts of a sequence independent of each other. |
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MRFScoringFunction
This class implements the scoring function for any MRF (Markov Random Field). |
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NormalizableScoringFunction
The interface for normalizable ScoringFunction s. |
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NormalizedScoringFunction
This class makes an unnormalized ScoringFunction to a normalized ScoringFunction. |
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ScoringFunction
This interface is the main part of any ScoreClassifier . |
Classes in de.jstacs.scoringFunctions used by de.jstacs.scoringFunctions.directedGraphicalModels | |
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AbstractNormalizableScoringFunction
This class is the main part of any ScoreClassifier . |
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NormalizableScoringFunction
The interface for normalizable ScoringFunction s. |
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ScoringFunction
This interface is the main part of any ScoreClassifier . |
Classes in de.jstacs.scoringFunctions used by de.jstacs.scoringFunctions.homogeneous | |
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AbstractNormalizableScoringFunction
This class is the main part of any ScoreClassifier . |
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NormalizableScoringFunction
The interface for normalizable ScoringFunction s. |
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ScoringFunction
This interface is the main part of any ScoreClassifier . |
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VariableLengthScoringFunction
This is the main class for all ScoringFunction s that allow to score
subsequences of arbitrary length. |
Classes in de.jstacs.scoringFunctions used by de.jstacs.scoringFunctions.mix | |
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AbstractNormalizableScoringFunction
This class is the main part of any ScoreClassifier . |
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NormalizableScoringFunction
The interface for normalizable ScoringFunction s. |
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ScoringFunction
This interface is the main part of any ScoreClassifier . |
Classes in de.jstacs.scoringFunctions used by de.jstacs.scoringFunctions.mix.motifSearch | |
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AbstractNormalizableScoringFunction
This class is the main part of any ScoreClassifier . |
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NormalizableScoringFunction
The interface for normalizable ScoringFunction s. |
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ScoringFunction
This interface is the main part of any ScoreClassifier . |
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