Uses of Class
de.jstacs.models.mixture.motif.positionprior.PositionPrior

Packages that use PositionPrior
de.jstacs.models.mixture.motif   
de.jstacs.models.mixture.motif.positionprior   
 

Uses of PositionPrior in de.jstacs.models.mixture.motif
 

Fields in de.jstacs.models.mixture.motif declared as PositionPrior
protected  PositionPrior HiddenMotifMixture.posPrior
          The prior for the positions.
 

Constructors in de.jstacs.models.mixture.motif with parameters of type PositionPrior
HiddenMotifMixture(Model[] models, boolean[] optimzeArray, int components, int starts, boolean estimateComponentProbs, double[] componentHyperParams, double[] weights, PositionPrior posPrior, AbstractMixtureModel.Algorithm algorithm, double alpha, double eps, AbstractMixtureModel.Parameterization parametrization, int initialIteration, int stationaryIteration, BurnInTest burnInTest)
          Creates a new HiddenMotifMixture.
SingleHiddenMotifMixture(Model motif, Model bg, boolean trainOnlyMotifModel, int starts, double[] componentHyperParams, double[] weights, PositionPrior posPrior, AbstractMixtureModel.Algorithm algorithm, double alpha, double eps, AbstractMixtureModel.Parameterization parametrization, int initialIteration, int stationaryIteration, BurnInTest burnInTest)
          Creates a new SingleHiddenMotifMixture.
SingleHiddenMotifMixture(Model motif, Model bg, boolean trainOnlyMotifModel, int starts, double[] componentHyperParams, PositionPrior posPrior, double alpha, double eps, AbstractMixtureModel.Parameterization parametrization)
          Creates a new SingleHiddenMotifMixture using EM and estimating the probability for finding a motif.
SingleHiddenMotifMixture(Model motif, Model bg, boolean trainOnlyMotifModel, int starts, double motifProb, PositionPrior posPrior, double alpha, double eps, AbstractMixtureModel.Parameterization parametrization)
          Creates a new SingleHiddenMotifMixture using EM and fixed probability for finding a motif.
 

Uses of PositionPrior in de.jstacs.models.mixture.motif.positionprior
 

Subclasses of PositionPrior in de.jstacs.models.mixture.motif.positionprior
 class GaussianLikePositionPrior
          This class implements a gaussian like discrete truncated prior.
 class UniformPositionPrior
          This prior implements a uniform distribution for the start position.
 

Methods in de.jstacs.models.mixture.motif.positionprior that return PositionPrior
 PositionPrior PositionPrior.clone()