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Packages that use EmptySampleException | |
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de.jstacs.data | Provides classes for the representation of data. |
de.jstacs.data.sequences | Provides classes for representing sequences. |
de.jstacs.models.discrete.homogeneous |
Uses of EmptySampleException in de.jstacs.data |
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Methods in de.jstacs.data that throw EmptySampleException | |
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static Sample |
Sample.diff(Sample data,
Sample... samples)
This method computes the difference between the Sample data and
the Sample s samples . |
static Sample |
Sample.intersection(Sample... samples)
This method computes the intersection between all elements/ Sample
s of the array, i.e. it returns a Sample containing only
Sequence s that are contained in all Sample s of the array. |
Pair<Sample[],double[][]> |
Sample.partition(double[] sequenceWeights,
int k,
Sample.PartitionMethod method)
This method partitions the elements, i.e. the Sequence s, of the
Sample and the corresponding weights in k distinct parts. |
Pair<Sample[],double[][]> |
Sample.partition(double[] sequenceWeights,
Sample.PartitionMethod method,
double... percentage)
This method partitions the elements, i.e. the Sequence s, of the
Sample and the corresponding weights in distinct parts where each part holds the corresponding
percentage given in the array percentage . |
Sample[] |
Sample.partition(double p,
Sample.PartitionMethod method,
int subsequenceLength)
This method partitions the elements, i.e. the Sequence s, of the
Sample in two distinct parts. |
Sample[] |
Sample.partition(int k,
Sample.PartitionMethod method)
This method partitions the elements, i.e. the Sequence s, of the
Sample in k distinct parts. |
Sample[] |
Sample.partition(Sample.PartitionMethod method,
double... percentage)
This method partitions the elements, i.e. the Sequence s, of the
Sample in distinct parts where each part holds the corresponding
percentage given in the array percentage . |
Sample |
Sample.subSampling(int number)
Randomly samples elements, i.e. |
static Sample |
Sample.union(Sample[] s,
boolean[] in)
This method unites all Sample s of the array s
regarding the array in . |
static Sample |
Sample.union(Sample[] s,
boolean[] in,
int subsequenceLength)
This method unites all Sample s of the array s
regarding the array in and sets the element length in the
united Sample to subsequenceLength . |
Constructors in de.jstacs.data that throw EmptySampleException | |
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DNASample(String fName)
Creates a new sample of DNA sequence from a FASTA file with file name fName . |
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DNASample(String fName,
char ignore)
Creates a new sample of DNA sequence from a file with file name fName . |
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DNASample(String fName,
char ignore,
SequenceAnnotationParser parser)
Creates a new sample of DNA sequence from a file with file name fName using the given parser . |
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Sample(AlphabetContainer abc,
AbstractStringExtractor se)
Creates a new Sample from a StringExtractor
using the given AlphabetContainer . |
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Sample(AlphabetContainer abc,
AbstractStringExtractor se,
int subsequenceLength)
Creates a new Sample from a StringExtractor
using the given AlphabetContainer and all overlapping windows of
length subsequenceLength . |
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Sample(AlphabetContainer abc,
AbstractStringExtractor se,
String delim)
Creates a new Sample from a StringExtractor
using the given AlphabetContainer and a delimiter
delim . |
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Sample(AlphabetContainer abc,
AbstractStringExtractor se,
String delim,
int subsequenceLength)
Creates a new Sample from a StringExtractor
using the given AlphabetContainer , the given delimiter
delim and all overlapping windows of length
subsequenceLength . |
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Sample(String annotation,
Sequence... seqs)
Creates a new Sample from an array of Sequence s and a
given annotation. |
Uses of EmptySampleException in de.jstacs.data.sequences |
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Methods in de.jstacs.data.sequences that throw EmptySampleException | |
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static Sample |
SparseSequence.getSample(AlphabetContainer con,
AbstractStringExtractor... se)
This method allows to create a Sample containing SparseSequence s. |
Uses of EmptySampleException in de.jstacs.models.discrete.homogeneous |
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Methods in de.jstacs.models.discrete.homogeneous that throw EmptySampleException | |
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Sample |
HomogeneousModel.emitSample(int no,
int... length)
Creates a Sample of a given number of Sequence s from a
trained homogeneous model. |
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