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Packages that use SafeOutputStream | |
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de.jstacs.classifier.scoringFunctionBased | Provides the classes for Classifier s that are based on ScoringFunction s. |
de.jstacs.models.discrete.inhomogeneous | This package contains various inhomogeneous models. |
de.jstacs.models.mixture | This package is the super package for any mixture model. |
de.jstacs.motifDiscovery | This package provides the framework including the interface for any de novo motif discoverer |
de.jstacs.utils | This package contains a bundle of useful classes and interfaces like ... |
Uses of SafeOutputStream in de.jstacs.classifier.scoringFunctionBased |
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Fields in de.jstacs.classifier.scoringFunctionBased declared as SafeOutputStream | |
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protected SafeOutputStream |
ScoreClassifier.sostream
This stream is used for comments, e.g. during the training, ... . |
Uses of SafeOutputStream in de.jstacs.models.discrete.inhomogeneous |
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Fields in de.jstacs.models.discrete.inhomogeneous declared as SafeOutputStream | |
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protected SafeOutputStream |
InhomogeneousDGM.sostream
This stream is used for comments, computation steps/results or any other kind of output during the training, ... etc. |
Uses of SafeOutputStream in de.jstacs.models.mixture |
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Fields in de.jstacs.models.mixture declared as SafeOutputStream | |
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protected SafeOutputStream |
AbstractMixtureModel.sostream
This is the stream for writing information while training. |
Uses of SafeOutputStream in de.jstacs.motifDiscovery |
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Methods in de.jstacs.motifDiscovery with parameters of type SafeOutputStream | |
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static boolean |
MutableMotifDiscovererToolbox.doHeuristicSteps(ScoringFunction[] funs,
Sample[] data,
double[][] weights,
SFBasedOptimizableFunction opt,
DifferentiableFunction neg,
byte algorithm,
double linEps,
StartDistanceForecaster startDistance,
SafeOutputStream out,
boolean breakOnChanged,
History[][] hist,
int[][] minimalNewLength,
boolean maxPos)
This method tries to make some heuristic step if at least one MutableMotifDiscovererToolbox.InitMethodForScoringFunction is a MutableMotifDiscoverer . |
static boolean |
MutableMotifDiscovererToolbox.findModification(int clazz,
int motif,
MutableMotifDiscoverer mmd,
ScoringFunction[] score,
Sample[] data,
SFBasedOptimizableFunction opt,
DifferentiableFunction neg,
byte algo,
double linEps,
StartDistanceForecaster startDistance,
SafeOutputStream out,
History hist,
int minimalNewLength,
boolean maxPos)
This method tries to find a modification, i.e. shifting, shrinking, or expanding a motif, that is promising. |
static double[][] |
MutableMotifDiscovererToolbox.optimize(ScoringFunction[] funs,
SFBasedOptimizableFunction opt,
byte algorithm,
double eps,
double linEps,
StartDistanceForecaster startDistance,
SafeOutputStream out,
boolean breakOnChanged,
History[][] hist,
int[][] minimalNewLength,
OptimizableFunction.KindOfParameter plugIn,
boolean maxPos)
This method tries to optimize the problem at hand as good as possible. |
static double[][] |
MutableMotifDiscovererToolbox.optimize(ScoringFunction[] funs,
SFBasedOptimizableFunction opt,
byte algorithm,
double eps,
double linEps,
StartDistanceForecaster startDistance,
SafeOutputStream out,
boolean breakOnChanged,
History template,
OptimizableFunction.KindOfParameter plugIn,
boolean maxPos)
This method tries to optimize the problem at hand as good as possible. |
Uses of SafeOutputStream in de.jstacs.utils |
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Methods in de.jstacs.utils that return SafeOutputStream | |
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static SafeOutputStream |
SafeOutputStream.getSafeOutputStream(OutputStream out)
This method returns an instance of SafeOutputStream for a given OutputStream . |
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