Uses of Package
de.jstacs.data.sequences.annotation

Packages that use de.jstacs.data.sequences.annotation
de.jstacs.data Provides classes for the representation of data. 
de.jstacs.data.sequences Provides classes for representing sequences. 
de.jstacs.data.sequences.annotation Provides the facilities to annotate Sequences using a number of pre-defined annotation types, or additional implementations of the SequenceAnnotation class 
 

Classes in de.jstacs.data.sequences.annotation used by de.jstacs.data
SequenceAnnotation
          Class for a general annotation of a Sequence.
 

Classes in de.jstacs.data.sequences.annotation used by de.jstacs.data.sequences
SequenceAnnotation
          Class for a general annotation of a Sequence.
 

Classes in de.jstacs.data.sequences.annotation used by de.jstacs.data.sequences.annotation
LocatedSequenceAnnotation
          Class for a SequenceAnnotation that has a position on the sequence, e.g for transcription start sites or intron-exon junctions.
LocatedSequenceAnnotationWithLength
          Class for a SequenceAnnotation that has a position on the sequence and a length, e.g. for donor splice sites, exons, or genes.
MotifAnnotation
          Class for a StrandedLocatedSequenceAnnotationWithLength that is a motif.
SequenceAnnotation
          Class for a general annotation of a Sequence.
SinglePositionSequenceAnnotation
          Class for some annotations that consist mainly of one position on a sequence.
SinglePositionSequenceAnnotation.Type
          The possible types of a SinglePositionSequenceAnnotation.
StrandedLocatedSequenceAnnotationWithLength
          Class for a SequenceAnnotation that has a position, a length, and an orientation on the strand of a Sequence.
StrandedLocatedSequenceAnnotationWithLength.Strand
          The possible orientations on the strands.