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Packages that use ParameterSet | |
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de.jstacs | This package is the root package for the most and important packages. |
de.jstacs.classifier.assessment | This package allows to assess classifiers. |
de.jstacs.classifier.scoringFunctionBased | Provides the classes for Classifier s that are based on ScoringFunction s. |
de.jstacs.classifier.scoringFunctionBased.cll | Provides the implementation of the log conditional likelihood as an OptimizableFunction and a classifier that uses log conditional likelihood or supervised posterior
to learn the parameters of a set of ScoringFunctions |
de.jstacs.data | Provides classes for the representation of data. |
de.jstacs.data.alphabets | Provides classes for the representation of discrete and continuous alphabets, including a DNAAlphabet for the most common case of DNA-sequences |
de.jstacs.io | Provides classes for reading data from and writing to a file and storing a number of datatypes, including all primitives, arrays of primitives, and Storable s to an XML-representation |
de.jstacs.models.discrete | |
de.jstacs.models.discrete.inhomogeneous.parameters | |
de.jstacs.parameters | This package provides classes for parameters that establish a general convention for the description of parameters
as defined in the Parameter -interface. |
Uses of ParameterSet in de.jstacs |
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Methods in de.jstacs that return ParameterSet | |
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ParameterSet |
InstantiableFromParameterSet.getCurrentParameterSet()
Returns the ParameterSet that has been used to instantiate the current instance of the implementing
class. |
Uses of ParameterSet in de.jstacs.classifier.assessment |
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Subclasses of ParameterSet in de.jstacs.classifier.assessment | |
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class |
ClassifierAssessmentAssessParameterSet
This class is the super-class used by all ClassifierAssessmentAssessParameterSet s. |
class |
KFoldCVAssessParameterSet
This class implements a ClassifierAssessmentAssessParameterSet that must be used
to call method assess() of a KFoldCrossValidation . |
class |
RepeatedHoldOutAssessParameterSet
This class implements a ClassifierAssessmentAssessParameterSet that must be used
to call method assess() of a RepatedHoldOutExperiment . |
class |
RepeatedSubSamplingAssessParameterSet
This class implements a ClassifierAssessmentAssessParameterSet that must be used
to call method assess() of a RepatedSubSamplingExperiment . |
class |
Sampled_RepeatedHoldOutAssessParameterSet
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Methods in de.jstacs.classifier.assessment that return ParameterSet | |
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static ParameterSet[] |
ClassifierAssessmentAssessParameterSet.getAllClassifierAssessmentAssessParameterSets()
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Uses of ParameterSet in de.jstacs.classifier.scoringFunctionBased |
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Subclasses of ParameterSet in de.jstacs.classifier.scoringFunctionBased | |
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class |
ScoreClassifierParameterSet
The parameter set for any CL classifier. |
Uses of ParameterSet in de.jstacs.classifier.scoringFunctionBased.cll |
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Subclasses of ParameterSet in de.jstacs.classifier.scoringFunctionBased.cll | |
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class |
CLLClassifierParameterSet
This class contains the parameters for the CLLClassifier . |
Uses of ParameterSet in de.jstacs.data |
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Subclasses of ParameterSet in de.jstacs.data | |
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static class |
Alphabet.AlphabetParameterSet
The super class for the ParameterSet of any Alphabet . |
class |
AlphabetContainerParameterSet
Class for the ParameterSet of an AlphabetContainer . |
static class |
AlphabetContainerParameterSet.AlphabetArrayParameterSet
Class for the parameters of an array of Alphabet s of defined length. |
static class |
AlphabetContainerParameterSet.SectionDefinedAlphabetParameterSet
Class for the parameters of an array of Alphabet s where each alphabet may be used for one or more
sections of positions. |
Uses of ParameterSet in de.jstacs.data.alphabets |
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Subclasses of ParameterSet in de.jstacs.data.alphabets | |
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static class |
ContinuousAlphabet.ContinuousAlphabetParameterSet
Class for the ParameterSet of a ContinuousAlphabet . |
static class |
DiscreteAlphabet.DiscreteAlphabetParameterSet
Class for the ParameterSet of a DiscreteAlphabet . |
static class |
DNAAlphabet.DNAAlphabetParameterSet
The parameter set for an DNA alphabet. |
Uses of ParameterSet in de.jstacs.io |
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Methods in de.jstacs.io with parameters of type ParameterSet | |
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static InstantiableFromParameterSet |
ParameterSetParser.getInstanceFromParameterSet(ParameterSet pars)
Returns an instance of a subclass of InstantiableFromParameterSet that can be instantiated by
the ParameterSet pars . |
static InstantiableFromParameterSet |
ParameterSetParser.getInstanceFromParameterSet(ParameterSet pars,
Class instanceClass)
Returns an instance of a subclass of InstantiableFromParameterSet that can be instantiated by
the ParameterSet pars . |
Uses of ParameterSet in de.jstacs.models.discrete |
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Subclasses of ParameterSet in de.jstacs.models.discrete | |
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class |
DGMParameterSet
The super ParameterSet for any ParameterSet of a DiscreteGraphicalModel . |
Uses of ParameterSet in de.jstacs.models.discrete.inhomogeneous.parameters |
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Subclasses of ParameterSet in de.jstacs.models.discrete.inhomogeneous.parameters | |
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class |
BayesianNetworkModelParameterSet
The ParameterSet for the class BayesianNetworkModel. |
class |
FSDAGMParameterSet
The class for the parameters of a FSDAGModel. |
class |
IDGMParameterSet
This is the abstract container of parameters that is root container for all inhomogeneous discrete graphical model parameter containers. |
Uses of ParameterSet in de.jstacs.parameters |
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Subclasses of ParameterSet in de.jstacs.parameters | |
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class |
ArrayParameterSet
Class for a ParameterSet that consists of a length-Parameter that defines the length
of the array and an array of ParameterSetContainer s of this length. |
class |
ExpandableParameterSet
A class for a ParameterSet that can be expanded by additional Parameter s at runtime. |
class |
InstanceParameterSet
Abstract class for a ParameterSet containing all parameters necessary to construct an
Object that implements InstantiableFromParameterSet . |
class |
SimpleParameterSet
Class for a ParameterSet that is constructed from an array of Parameters
and thus does nothing in the loadParameters() -method. |
Fields in de.jstacs.parameters declared as ParameterSet | |
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protected ParameterSet |
Parameter.neededReference
In cases, when the validity of some ParameterSet
depends on the value of this Parameter , this variable holds a reference
to that ParameterSet |
protected ParameterSet |
CollectionParameter.parameters
The internal ParameterSet that holds the possible values |
protected ParameterSet |
Parameter.parent
If this Parameter is enclosed in a ParameterSet ,
this variable holds a reference to that ParameterSet . |
protected ParameterSet |
ExpandableParameterSet.template
The template for each ParameterSet |
Methods in de.jstacs.parameters that return ParameterSet | |
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ParameterSet |
ParameterSet.clone()
Creates a full clone (deep copy) of this ParameterSet . |
ParameterSet |
RangeParameter.getNeededReference()
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ParameterSet |
Parameter.getNeededReference()
Returns a reference to a ParameterSet whose hasDefaultOrIsSet() method depends on the value of this Parameter . |
ParameterSet |
CollectionParameter.getParametersInCollection()
Returns the possible values in this collection |
ParameterSet |
Parameter.getParent()
Returns a reference to the ParameterSet enclosing this Parameter . |
ParameterSet |
ParameterSetContainer.getValue()
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Methods in de.jstacs.parameters with parameters of type ParameterSet | |
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boolean |
ExpandableParameterSet.replaceContentWith(ParameterSet[] paramSetArray)
First removes all previous added ParameterSetContainer and afterwards adds all given
ParameterSet s (in the given order) enclosed in new ParameterSetContainer s. |
void |
RangeParameter.setNeededReference(ParameterSet reference)
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void |
Parameter.setNeededReference(ParameterSet reference)
Sets an internal reference to a ParameterSet whose validity depends on
the value of this Parameter . |
void |
Parameter.setParent(ParameterSet parent)
Sets the reference of the enclosing ParameterSet of this
Parameter to parent . |
Constructors in de.jstacs.parameters with parameters of type ParameterSet | |
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ArrayParameterSet(Class instanceClass,
ParameterSet template,
String nameTemplate,
String commentTemplate)
Creates a new ArrayParameterSet from a Class that can be instantiated using this
ArrayParameterSet and templates for the ParameterSet in each element of the array,
the name and the comment that are displayed for the ParameterSetContainer s enclosing the ParameterSet s. |
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ArrayParameterSet(Class instanceClass,
ParameterSet template,
String nameTemplate,
String commentTemplate,
String lengthName,
String lengthComment,
NumberValidator<Integer> allowedLengths)
Creates a new ArrayParameterSet from a Class that can be instantiated using this
ArrayParameterSet and templates for the ParameterSet in each element of the array,
the name and the comment that are displayed for the ParameterSetContainer s enclosing the ParameterSet s. |
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CollectionParameter(ParameterSet[] values,
String name,
String comment,
boolean required)
Constructor for a CollectionParameter from an array of ParameterSets. |
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CollectionParameter(ParameterSet options,
int selected,
int defaultSelected,
boolean userSelected,
String name,
String comment,
boolean required,
DataType datatype,
String errorMessage,
boolean rangeable)
Creates a new CollectionParameter from the necessary field. |
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ExpandableParameterSet(Class instanceClass,
ParameterSet[] templateAndContent,
String nameTemplate,
String commentTemplate)
Creates a new ExpandableParameterSet from a ParameterSet -array. |
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ExpandableParameterSet(Class alternativeInstanceClass,
ParameterSet template,
String nameTemplate,
String commentTemplate)
Creates a new ExpandableParameterSet from a Class that can be instantiated using this
ExpandableParameterSet and templates for the ParameterSet in each element of the array,
the name and the comment that are displayed for the ParameterSetContainer s enclosing the ParameterSet s. |
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ExpandableParameterSet(Class alternativeInstanceClass,
ParameterSet template,
String nameTemplate,
String commentTemplate,
int initCount)
Creates a new ExpandableParameterSet from a Class that can be instantiated using this
ExpandableParameterSet and templates for the ParameterSet in each element of the array,
the name and the comment that are displayed for the ParameterSetContainer s enclosing the ParameterSet s. |
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MultiSelectionCollectionParameter(ParameterSet[] values,
String name,
String comment,
boolean required)
Creates a new MultiSelectionCollectionParameter from an array of ParameterSet s. |
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MultiSelectionCollectionParameter(ParameterSet options,
boolean[] selected,
boolean[] defaultSelected,
boolean userSelected,
String name,
String comment,
boolean required,
DataType datatype,
String errorMessage,
int current,
boolean makeRanged)
Creates a new MultiSelectionCollectionParameter from the necessary field. |
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ParameterSetContainer(String name,
String comment,
ParameterSet content)
Creates an new ParameterSetContainer out of a ParameterSet . |
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