Uses of Interface
de.jstacs.algorithms.Alignment.Costs

Packages that use Alignment.Costs
de.jstacs.algorithms Provides classes for algorithms on graphs. 
 

Uses of Alignment.Costs in de.jstacs.algorithms
 

Classes in de.jstacs.algorithms that implement Alignment.Costs
static class Alignment.SimpleCosts
          Class for simple costs with costs mismatch for a mismatch, costs start to start a new gap, elong to elongate a gap by one position, and costs of 0 for a match
 

Constructors in de.jstacs.algorithms with parameters of type Alignment.Costs
Alignment(Sequence s1, Sequence s2, Alignment.Costs costs)
          Creates a new Alignment.StringAlignment instance that aligns the sequences s1 and s2 using the costs defined in costs.