Package de.jstacs.data.sequences

Provides classes for representing sequences.

See:
          Description

Class Summary
ArbitrarySequence The class for any continuous or hybrid sequence.
ByteSequence This class can be used for discrete AlphabetContainer with alphabets that use only few symbols.
DiscreteSequence The main class for any discrete sequence.
IntSequence This class can be used for discrete AlphabetContainer with alphabets that use a huge number of symbols.
PermutedSequence Class for a permuted sequence.
RecursiveSequence This is the main class for subsequences, composite sequences, ... .
ShortSequence This class can be used for discrete AlphabetContainer with alphabets that use many different symbols.
SparseSequence This class is an implementation for sequence on one alphabet with length 4.
 

Exception Summary
WrongSequenceTypeException This Exception indicates that the type of the sequence (ByteSequence, ShortSequence, ...) is not suitable for a given AlphabetContainer.
 

Package de.jstacs.data.sequences Description

Provides classes for representing sequences.
The implementations of sequences currently include DiscreteSequences prepared for alphabets of different sizes, and ArbitrarySequences that may contain continuous values as well.
As sub-package provides the facilities to annotate Sequences.