Uses of Class
de.jstacs.utils.DoubleList

Packages that use DoubleList
de.jstacs.scoringFunctions Provides ScoringFunctions that can be used in a ScoreClassifier
de.jstacs.scoringFunctions.directedGraphicalModels Provides ScoringFunctions that are equivalent to directed graphical models. 
de.jstacs.scoringFunctions.homogeneous Provides ScoringFunctions that are homogeneous, i.e. model probabilities or scores independent of the position within a sequence 
de.jstacs.scoringFunctions.mix Provides ScoringFunctions that are mixtures of other ScoringFunctions. 
 

Uses of DoubleList in de.jstacs.scoringFunctions
 

Methods in de.jstacs.scoringFunctions with parameters of type DoubleList
abstract  double VariableLengthScoringFunction.getLogScoreAndPartialDerivation(Sequence seq, int start, int length, IntList indices, DoubleList dList)
          This method computes the logarithm of the score and the partial derivations for a given subsequence.
 double VariableLengthScoringFunction.getLogScoreAndPartialDerivation(Sequence seq, int start, IntList indices, DoubleList dList)
           
 double UniformScoringFunction.getLogScoreAndPartialDerivation(Sequence seq, int start, IntList indices, DoubleList dList)
           
 double ScoringFunction.getLogScoreAndPartialDerivation(Sequence seq, int start, IntList indices, DoubleList partialDer)
          Returns the log score for the sequence and fills the list with the indices and the partial derivations.
 double MRFScoringFunction.getLogScoreAndPartialDerivation(Sequence seq, int start, IntList indices, DoubleList partialDer)
           
 double IndependentProductScoringFunction.getLogScoreAndPartialDerivation(Sequence seq, int start, IntList indices, DoubleList partialDer)
           
 double ScoringFunction.getLogScoreAndPartialDerivation(Sequence seq, IntList indices, DoubleList partialDer)
          Returns the log score for the sequence and fills the list with the indices and the partial derivations.
 double AbstractNormalizableScoringFunction.getLogScoreAndPartialDerivation(Sequence seq, IntList indices, DoubleList partialDer)
           
 

Uses of DoubleList in de.jstacs.scoringFunctions.directedGraphicalModels
 

Methods in de.jstacs.scoringFunctions.directedGraphicalModels with parameters of type DoubleList
 double BayesianNetworkScoringFunction.getLogScoreAndPartialDerivation(Sequence seq, int start, IntList indices, DoubleList partialDer)
           
 

Uses of DoubleList in de.jstacs.scoringFunctions.homogeneous
 

Methods in de.jstacs.scoringFunctions.homogeneous with parameters of type DoubleList
 double UniformHomogeneousScoringFunction.getLogScoreAndPartialDerivation(Sequence seq, int start, int length, IntList indices, DoubleList dList)
           
 double HMMScoringFunction.getLogScoreAndPartialDerivation(Sequence seq, int start, int length, IntList indices, DoubleList dList)
           
 double HMM0ScoringFunction.getLogScoreAndPartialDerivation(Sequence seq, int start, int length, IntList indices, DoubleList dList)
           
 

Uses of DoubleList in de.jstacs.scoringFunctions.mix
 

Fields in de.jstacs.scoringFunctions.mix declared as DoubleList
protected  DoubleList[] AbstractMixtureScoringFunction.dList
          This array contains some DoubleLists that are used while computing the partial derivation
 

Methods in de.jstacs.scoringFunctions.mix with parameters of type DoubleList
 double MixtureScoringFunction.getLogScoreAndPartialDerivation(Sequence seq, int start, IntList indices, DoubleList partialDer)