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validator
- Variable in class de.jstacs.parameters.
SimpleParameter
The validator for the parameter values
value
- Variable in class de.jstacs.parameters.
SimpleParameter
The current value of the parameter
valueOf(String)
- Static method in enum de.jstacs.algorithms.
Alignment.Costs.Direction
Returns the enum constant of this type with the specified name.
valueOf(String)
- Static method in enum de.jstacs.algorithms.optimization.
Optimizer.TerminationCondition
Returns the enum constant of this type with the specified name.
valueOf(String)
- Static method in enum de.jstacs.classifier.
MeasureParameters.Measure
Returns the enum constant of this type with the specified name.
valueOf(String)
- Static method in enum de.jstacs.data.
Sample.PartitionMethod
Returns the enum constant of this type with the specified name.
valueOf(String)
- Static method in enum de.jstacs.data.
Sample.WeightedSampleFactory.SortOperation
Returns the enum constant of this type with the specified name.
valueOf(String)
- Static method in enum de.jstacs.data.sequences.annotation.
SinglePositionSequenceAnnotation.Type
Returns the enum constant of this type with the specified name.
valueOf(String)
- Static method in enum de.jstacs.data.sequences.annotation.
StrandedLocatedSequenceAnnotationWithLength.Strand
Returns the enum constant of this type with the specified name.
valueOf(String)
- Static method in enum de.jstacs.
DataType
Returns the enum constant of this type with the specified name.
valueOf(String)
- Static method in enum de.jstacs.io.
SubstringFilenameFilter.PartOfName
Returns the enum constant of this type with the specified name.
valueOf(String)
- Static method in enum de.jstacs.models.discrete.inhomogeneous.
StructureLearner.LearningType
Returns the enum constant of this type with the specified name.
valueOf(String)
- Static method in enum de.jstacs.models.discrete.inhomogeneous.
StructureLearner.ModelType
Returns the enum constant of this type with the specified name.
valueOf(String)
- Static method in enum de.jstacs.models.mixture.
AbstractMixtureModel.Algorithm
Returns the enum constant of this type with the specified name.
valueOf(String)
- Static method in enum de.jstacs.models.mixture.
AbstractMixtureModel.Parameterization
Returns the enum constant of this type with the specified name.
valueOf(String)
- Static method in enum de.jstacs.parameters.
RangeParameter.RangeType
Returns the enum constant of this type with the specified name.
valueOf(String)
- Static method in enum de.jstacs.parameters.
RangeParameter.Scale
Returns the enum constant of this type with the specified name.
values()
- Static method in enum de.jstacs.algorithms.
Alignment.Costs.Direction
Returns an array containing the constants of this enum type, in the order they're declared.
values()
- Static method in enum de.jstacs.algorithms.optimization.
Optimizer.TerminationCondition
Returns an array containing the constants of this enum type, in the order they're declared.
values()
- Static method in enum de.jstacs.classifier.
MeasureParameters.Measure
Returns an array containing the constants of this enum type, in the order they're declared.
values()
- Static method in enum de.jstacs.data.
Sample.PartitionMethod
Returns an array containing the constants of this enum type, in the order they're declared.
values()
- Static method in enum de.jstacs.data.
Sample.WeightedSampleFactory.SortOperation
Returns an array containing the constants of this enum type, in the order they're declared.
values()
- Static method in enum de.jstacs.data.sequences.annotation.
SinglePositionSequenceAnnotation.Type
Returns an array containing the constants of this enum type, in the order they're declared.
values()
- Static method in enum de.jstacs.data.sequences.annotation.
StrandedLocatedSequenceAnnotationWithLength.Strand
Returns an array containing the constants of this enum type, in the order they're declared.
values()
- Static method in enum de.jstacs.
DataType
Returns an array containing the constants of this enum type, in the order they're declared.
values()
- Static method in enum de.jstacs.io.
SubstringFilenameFilter.PartOfName
Returns an array containing the constants of this enum type, in the order they're declared.
values()
- Static method in enum de.jstacs.models.discrete.inhomogeneous.
StructureLearner.LearningType
Returns an array containing the constants of this enum type, in the order they're declared.
values()
- Static method in enum de.jstacs.models.discrete.inhomogeneous.
StructureLearner.ModelType
Returns an array containing the constants of this enum type, in the order they're declared.
values()
- Static method in enum de.jstacs.models.mixture.
AbstractMixtureModel.Algorithm
Returns an array containing the constants of this enum type, in the order they're declared.
values()
- Static method in enum de.jstacs.models.mixture.
AbstractMixtureModel.Parameterization
Returns an array containing the constants of this enum type, in the order they're declared.
values()
- Static method in enum de.jstacs.parameters.
RangeParameter.RangeType
Returns an array containing the constants of this enum type, in the order they're declared.
values()
- Static method in enum de.jstacs.parameters.
RangeParameter.Scale
Returns an array containing the constants of this enum type, in the order they're declared.
valuesToString()
- Method in class de.jstacs.parameters.
MultiSelectionCollectionParameter
valuesToString()
- Method in class de.jstacs.parameters.
ParameterSet
valuesToString()
- Method in class de.jstacs.parameters.
ParameterSetContainer
valuesToString()
- Method in interface de.jstacs.parameters.
RangeIterator
Returns a
String
-representation of the set of values.
valuesToString()
- Method in class de.jstacs.parameters.
RangeParameter
VariableLengthScoringFunction
- Class in
de.jstacs.scoringFunctions
This is the main class for all ScoringFunctions that allow to score subsequences of arbitrary length.
VariableLengthScoringFunction(AlphabetContainer)
- Constructor for class de.jstacs.scoringFunctions.
VariableLengthScoringFunction
This is the main constructor that creates an instance that models sequence s of arbitrary length.
VariableLengthScoringFunction(AlphabetContainer, int)
- Constructor for class de.jstacs.scoringFunctions.
VariableLengthScoringFunction
This is the main constructor that creates an instance that models sequence s of a given length.
VariableLengthScoringFunction(StringBuffer)
- Constructor for class de.jstacs.scoringFunctions.
VariableLengthScoringFunction
This is the constructor for
Storable
.
vars
- Variable in class de.jstacs.classifier.scoringFunctionBased.logPrior.
SeparateLogPrior
The base variances for the parameters of the
ScoringFunction
s of each class, the means of the non-class parameters should be 0.
voidEval(String)
- Method in class de.jstacs.utils.
REnvironment
Evaluates the String as R commands.
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