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Sequence
s using a number of pre-defined annotation types, or additional
implementations of the SequenceAnnotation
class
See:
Description
Class Summary | |
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CisRegulatoryModuleAnnotation | Annotation for a cis-regulatory module as defined by a set of MotifAnnotation s of the motifs in the module. |
IntronAnnotation | Annotation class for an intron as defined by a donor and an acceptor splice site. |
LocatedSequenceAnnotation | Class for a SequenceAnnotation that has a position on the sequence, e.g for transcription start sites or intron-exon junctions. |
LocatedSequenceAnnotationWithLength | Class for a SequenceAnnotation that has a position on the sequence and a length, e.g. for donor splice sites, exons, or genes. |
MotifAnnotation | Class for a StrandedLocatedSequenceAnnotationWithLength that is a motif. |
SequenceAnnotation | Class for a general annotation of a Sequence . |
SinglePositionSequenceAnnotation | Class for some annotations that consist mainly of one position on a sequence. |
StrandedLocatedSequenceAnnotationWithLength | Class for a SequenceAnnotation that has a position, a length, and an orientation on the strand of a Sequence . |
Enum Summary | |
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SinglePositionSequenceAnnotation.Type | The possible types of a SinglePositionSequenceAnnotation . |
StrandedLocatedSequenceAnnotationWithLength.Strand | The possible orientations on the strands. |
Provides the facilities to annotate Sequence
s using a number of pre-defined annotation types, or additional
implementations of the SequenceAnnotation
class.
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