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H

hasBeenOptimized - Variable in class de.jstacs.classifier.scoringFunctionBased.ScoreClassifier
This boolean indicates whether the classifier has been optimized with the method AbstractClassifier.train(Sample...) or the weighted version.
hasBeenOptimized() - Method in class de.jstacs.classifier.scoringFunctionBased.ScoreClassifier
This method returns true if the classifier has been optimized by a train-method.
hasDefault() - Method in class de.jstacs.parameters.CollectionParameter
Returns true, if this CollectionParameter has a default value.
hasDefaultOrIsSet() - Method in class de.jstacs.data.AlphabetContainerParameterSet.SectionDefinedAlphabetParameterSet
 
hasDefaultOrIsSet() - Method in class de.jstacs.models.discrete.DGMParameterSet
 
hasDefaultOrIsSet() - Method in class de.jstacs.parameters.ArrayParameterSet
 
hasDefaultOrIsSet() - Method in class de.jstacs.parameters.CollectionParameter
Returns true if all the parameters in this collection are either set by the user or have default values
hasDefaultOrIsSet() - Method in class de.jstacs.parameters.FileParameter
 
hasDefaultOrIsSet() - Method in class de.jstacs.parameters.InstanceParameterSet
 
hasDefaultOrIsSet() - Method in class de.jstacs.parameters.MultiSelectionCollectionParameter
 
hasDefaultOrIsSet() - Method in class de.jstacs.parameters.Parameter
Returns true if the parameter either has a default value or the value was set by the user.
hasDefaultOrIsSet() - Method in class de.jstacs.parameters.ParameterSet
Returns true if all parameters in this ParameterSet are either set by the user or have default values.
hasDefaultOrIsSet() - Method in class de.jstacs.parameters.ParameterSetContainer
 
hasDefaultOrIsSet() - Method in class de.jstacs.parameters.RangeParameter
 
hasDefaultOrIsSet() - Method in class de.jstacs.parameters.SimpleParameter
 
hasEveryWhereSameAlphabetSize() - Method in class de.jstacs.data.AlphabetContainer
Returns true if all used alphabets have the same alphabet size, otherwise false.
hashCode() - Method in class de.jstacs.data.Sequence
 
hasMoreElements() - Method in class de.jstacs.data.DiscreteSequenceEnumerator
 
hasMoreElements() - Method in class de.jstacs.data.Sample.ElementEnumerator
 
hasMoreElements() - Method in class de.jstacs.io.SymbolExtractor
 
hasNext() - Method in class de.jstacs.data.bioJava.SimpleSequenceIterator
 
hiddenParameter - Variable in class de.jstacs.scoringFunctions.mix.AbstractMixtureScoringFunction
This array contains the hidden parameters of the instance.
hiddenPotential - Variable in class de.jstacs.scoringFunctions.mix.AbstractMixtureScoringFunction
This array contains the hidden potentials of the instance.
HMM0ScoringFunction - Class in de.jstacs.scoringFunctions.homogeneous
This scoring function implements a homogeneous Markov model of order zero (hMM(0)) for a fixed sequence length.
HMM0ScoringFunction(AlphabetContainer, int, double, boolean, boolean) - Constructor for class de.jstacs.scoringFunctions.homogeneous.HMM0ScoringFunction
The main constructor that creates an instance of a homogeneous Markov model of order 0.
HMM0ScoringFunction(StringBuffer) - Constructor for class de.jstacs.scoringFunctions.homogeneous.HMM0ScoringFunction
This is the constructor for Storable.
HMMScoringFunction - Class in de.jstacs.scoringFunctions.homogeneous
This scoring function implements a homogeneous Markov model of arbitrary order for any sequence length.
HMMScoringFunction(AlphabetContainer, int, double, double[], boolean, boolean, int) - Constructor for class de.jstacs.scoringFunctions.homogeneous.HMMScoringFunction
This is the main constructor.
HMMScoringFunction(StringBuffer) - Constructor for class de.jstacs.scoringFunctions.homogeneous.HMMScoringFunction
This is the constructor for Storable.
HomogeneousScoringFunction - Class in de.jstacs.scoringFunctions.homogeneous
This is the main class for all homogeneous ScoringFunctions.
HomogeneousScoringFunction(AlphabetContainer) - Constructor for class de.jstacs.scoringFunctions.homogeneous.HomogeneousScoringFunction
This is the main constructor that creates an instance that models sequence s of arbitrary length.
HomogeneousScoringFunction(AlphabetContainer, int) - Constructor for class de.jstacs.scoringFunctions.homogeneous.HomogeneousScoringFunction
This is the main constructor that creates an instance that models sequence s of a given length.
HomogeneousScoringFunction(StringBuffer) - Constructor for class de.jstacs.scoringFunctions.homogeneous.HomogeneousScoringFunction
This is the constructor for Storable.

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