|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use Result | |
---|---|
de.jstacs.classifier | This package provides the framework for any classifier. |
de.jstacs.classifier.assessment | This package allows to assess classifiers. |
de.jstacs.data.sequences.annotation | Provides the facilities to annotate Sequence s using a number of pre-defined annotation types, or additional
implementations of the SequenceAnnotation class |
de.jstacs.results | This package provides classes for results and sets of results. |
Uses of Result in de.jstacs.classifier |
---|
Subclasses of Result in de.jstacs.classifier | |
---|---|
static class |
AbstractScoreBasedClassifier.DoubleTableResult
This class is for a table of double s. |
Methods in de.jstacs.classifier that return types with arguments of type Result | |
---|---|
LinkedList<Result> |
MeasureParameters.getAnnotation()
Returns the selected parameters and their values as a list of results. |
protected LinkedList<? extends Result> |
AbstractScoreBasedClassifier.getResults(Sample[] s,
MeasureParameters params,
boolean exceptionIfNotComputeable,
boolean all)
|
protected LinkedList<? extends Result> |
AbstractClassifier.getResults(Sample[] s,
MeasureParameters params,
boolean exceptionIfNotComputeable,
boolean all)
This method computes the results for any evaluation of the classifier. |
Uses of Result in de.jstacs.classifier.assessment |
---|
Methods in de.jstacs.classifier.assessment that return types with arguments of type Result | |
---|---|
Collection<Result> |
Sampled_RepeatedHoldOutAssessParameterSet.getAnnotation()
|
Collection<Result> |
RepeatedSubSamplingAssessParameterSet.getAnnotation()
|
Collection<Result> |
RepeatedHoldOutAssessParameterSet.getAnnotation()
|
ArrayList<Result> |
KFoldCVAssessParameterSet.getAnnotation()
|
Collection<Result> |
ClassifierAssessmentAssessParameterSet.getAnnotation()
|
Uses of Result in de.jstacs.data.sequences.annotation |
---|
Methods in de.jstacs.data.sequences.annotation that return Result | |
---|---|
Result[] |
SequenceAnnotation.getAnnotations()
Returns the additional annotations of this SequenceAnnotation as given in the constructor. |
Constructors in de.jstacs.data.sequences.annotation with parameters of type Result | |
---|---|
CisRegulatoryModuleAnnotation(String identifier,
MotifAnnotation[] motifs,
Result... additionalAnnotation)
Creates a new CisRegulatoryModuleAnnotation from a set of motifs and possibly additional annotations. |
|
IntronAnnotation(String identifier,
SinglePositionSequenceAnnotation donor,
SinglePositionSequenceAnnotation acceptor,
Result... additionalAnnotation)
Creates a new IntronAnnotation from a donor SinglePositionSequenceAnnotation and an acceptor SinglePositionSequenceAnnotation and a set of additional annotations. |
|
LocatedSequenceAnnotation(int position,
String type,
String identifier,
Result... results)
Creates a new LocatedSequenceAnnotation of type type , with identifier identifier , and additional annotation (that does not fit the SequenceAnnotation definitions)
result . |
|
LocatedSequenceAnnotation(int position,
String type,
String identifier,
SequenceAnnotation[] annotations,
Result... additionalAnnotation)
Creates a new LocatedSequenceAnnotation of type type , with identifier identifier , additional annotation (that does not fit the SequenceAnnotation definitions)
result , and sub annotations. |
|
LocatedSequenceAnnotation(String type,
String identifier,
LocatedSequenceAnnotation[] annotations,
Result... additionalAnnotation)
Creates a new LocatedSequenceAnnotation of type type , with identifier identifier , additional annotation (that does not fit the SequenceAnnotation definitions)
result , and sub annotations. |
|
LocatedSequenceAnnotationWithLength(int position,
int length,
String type,
String identifier,
Result... results)
Creates a new LocatedSequenceAnnotationWithLength of type type , with identifier identifier , and additional annotation
(that does not fit the SequenceAnnotation definitions)
result . |
|
LocatedSequenceAnnotationWithLength(int position,
int length,
String type,
String identifier,
SequenceAnnotation[] annotations,
Result... additionalAnnotations)
Creates a new LocatedSequenceAnnotationWithLength of type type , with identifier identifier , additional annotation
(that does not fit the SequenceAnnotation definitions)
result , and sub-annotations. |
|
LocatedSequenceAnnotationWithLength(String type,
String identifier,
LocatedSequenceAnnotation[] annotations,
Result... additionalAnnotations)
Creates a new LocatedSequenceAnnotationWithLength of type type , with identifier identifier , additional annotation
(that does not fit the SequenceAnnotation definitions)
result , and sub-annotations. |
|
MotifAnnotation(String identifier,
int position,
int length,
StrandedLocatedSequenceAnnotationWithLength.Strand strandedness,
Result... additionalAnnotation)
Creates a new StrandedLocatedSequenceAnnotationWithLength of type type , with identifier identifier , and additional annotation
(that does not fit the SequenceAnnotation definitions)
additionalAnnotation . |
|
SequenceAnnotation(String type,
String identifier,
Result result)
Creates a new SequenceAnnotation of type type , with identifier identifier , and additional annotation (that does not fit the SequenceAnnotation definitions)
result . |
|
SequenceAnnotation(String type,
String identifier,
Result[]... results)
Creates a new SequenceAnnotation of type type , with identifier identifier , and additional annotation (that does not fit the SequenceAnnotation definitions)
results . |
|
SequenceAnnotation(String type,
String identifier,
SequenceAnnotation[] subAnnotations,
Result... additionalAnnotation)
Creates a new SequenceAnnotation of type type , with identifier identifier , and additional annotation (that does not fit the SequenceAnnotation definitions)
additionalAnnotation . |
|
SinglePositionSequenceAnnotation(SinglePositionSequenceAnnotation.Type type,
String identifier,
int position,
Result... additionalAnnotation)
Creates a new SinglePositionSequenceAnnotation of type type , with identifier identifier , position position ,
and additional annotations additionalAnnotation . |
|
StrandedLocatedSequenceAnnotationWithLength(int position,
int length,
StrandedLocatedSequenceAnnotationWithLength.Strand strandedness,
String type,
String identifier,
Result... results)
Creates a new StrandedLocatedSequenceAnnotationWithLength of type type , with identifier identifier , and additional annotation
(that does not fit the SequenceAnnotation definitions)
result . |
|
StrandedLocatedSequenceAnnotationWithLength(int position,
int length,
StrandedLocatedSequenceAnnotationWithLength.Strand strandedness,
String type,
String identifier,
SequenceAnnotation[] annotations,
Result... additionalAnnotations)
Creates a new StrandedLocatedSequenceAnnotationWithLength of type type , with identifier identifier , and additional annotation
(that does not fit the SequenceAnnotation definitions)
additionalAnnotations , and sub-annotations. |
|
StrandedLocatedSequenceAnnotationWithLength(String type,
String identifier,
StrandedLocatedSequenceAnnotationWithLength.Strand strandedness,
LocatedSequenceAnnotation[] annotations,
Result... additionalAnnotations)
Creates a new StrandedLocatedSequenceAnnotationWithLength of type type , with identifier identifier , and additional annotation
(that does not fit the SequenceAnnotation definitions)
additionalAnnotations , and sub-annotations. |
Constructor parameters in de.jstacs.data.sequences.annotation with type arguments of type Result | |
---|---|
LocatedSequenceAnnotation(int position,
String type,
String identifier,
Collection<Result> results)
Creates a new LocatedSequenceAnnotation of type type , with identifier identifier , and additional annotation (that does not fit the SequenceAnnotation definitions)
result . |
|
LocatedSequenceAnnotationWithLength(int position,
int length,
String type,
String identifier,
Collection<Result> results)
Creates a new LocatedSequenceAnnotationWithLength of type type , with identifier identifier , and additional annotation
(that does not fit the SequenceAnnotation definitions)
result . |
|
SequenceAnnotation(String type,
String identifier,
Collection<? extends Result> results)
Creates a new SequenceAnnotation of type type , with identifier identifier , and additional annotation (that does not fit the SequenceAnnotation definitions)
results . |
|
StrandedLocatedSequenceAnnotationWithLength(int position,
int length,
StrandedLocatedSequenceAnnotationWithLength.Strand strandedness,
String type,
String identifier,
Collection<Result> results)
Creates a new StrandedLocatedSequenceAnnotationWithLength of type type , with identifier identifier , and additional annotation
(that does not fit the SequenceAnnotation definitions)
result . |
Uses of Result in de.jstacs.results |
---|
Subclasses of Result in de.jstacs.results | |
---|---|
class |
CategoricalResult
A class for categorical results (i.e. non-numerical results) for primitives and Strings |
class |
ImageResult
A class for results that are images of the PNG format. |
class |
ListResult
Class for a Result that contains a list or a matrix, respectively, of ResultSet s. |
class |
NumericalResult
Class for numerical Result values. |
class |
SampleResult
Result that contains a Sample . |
class |
SimpleResult
Abstract class for a Result with a value of a primitive data type or String . |
class |
StorableResult
Class for results that are Storable s. |
Fields in de.jstacs.results declared as Result | |
---|---|
protected Result[] |
ResultSet.results
The set of results as an array of Result s |
Methods in de.jstacs.results that return Result | |
---|---|
static Result |
Result.createResult(String name,
String comment,
DataType datatype,
Object value)
Factory method to create a new Result . |
Result |
ResultSet.getResultAt(int index)
Returns Result number index in this ResultSet . |
Result[] |
ResultSet.getResults()
Returns all internal results. |
Methods in de.jstacs.results with parameters of type Result | |
---|---|
boolean |
Result.isCastableResult(Result test)
Returns true if the datatype of test can be casted to that of this instance and both have the same name and
comment for the result. |
boolean |
Result.isComparableResult(Result test)
Returns true if test and the current object have the same datatype, name and
comment for the result. |
Constructors in de.jstacs.results with parameters of type Result | |
---|---|
ResultSet(Result result)
Constructs a new ResultSet containing one Result . |
|
ResultSet(Result[]... results)
Constructs a new ResultSet from a 2-dimensional array of Result s. |
Constructor parameters in de.jstacs.results with type arguments of type Result | |
---|---|
ResultSet(Collection<? extends Result> results)
Constructs a new ResultSet from a Collection of type Result s. |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |