Uses of Class
de.jstacs.parameters.ParameterSet

Packages that use ParameterSet
de.jstacs This package is the root package for the most and important packages. 
de.jstacs.classifier.assessment This package allows to assess classifiers. 
de.jstacs.classifier.scoringFunctionBased Provides the classes for Classifiers that are based on ScoringFunctions. 
de.jstacs.classifier.scoringFunctionBased.cll Provides the implementation of the log conditional likelihood as an OptimizableFunction and a classifier that uses log conditional likelihood or supervised posterior to learn the parameters of a set of ScoringFunctions 
de.jstacs.data Provides classes for the representation of data. 
de.jstacs.data.alphabets Provides classes for the representation of discrete and continuous alphabets, including a DNAAlphabet for the most common case of DNA-sequences 
de.jstacs.io Provides classes for reading data from and writing to a file and storing a number of datatypes, including all primitives, arrays of primitives, and Storables to an XML-representation 
de.jstacs.models.discrete   
de.jstacs.models.discrete.inhomogeneous.parameters   
de.jstacs.parameters This package provides classes for parameters that establish a general convention for the description of parameters as defined in the Parameter-interface. 
 

Uses of ParameterSet in de.jstacs
 

Methods in de.jstacs that return ParameterSet
 ParameterSet InstantiableFromParameterSet.getCurrentParameterSet()
          Returns the ParameterSet that has been used to instantiate the current instance of the implementing class.
 

Uses of ParameterSet in de.jstacs.classifier.assessment
 

Subclasses of ParameterSet in de.jstacs.classifier.assessment
 class ClassifierAssessmentAssessParameterSet
          This class is the super-class used by all ClassifierAssessmentAssessParameterSets.
 class KFoldCVAssessParameterSet
          This class implements a ClassifierAssessmentAssessParameterSet that must be used to call method assess() of a KFoldCrossValidation.
 class RepeatedHoldOutAssessParameterSet
          This class implements a ClassifierAssessmentAssessParameterSet that must be used to call method assess() of a RepatedHoldOutExperiment.
 class RepeatedSubSamplingAssessParameterSet
          This class implements a ClassifierAssessmentAssessParameterSet that must be used to call method assess() of a RepatedSubSamplingExperiment.
 class Sampled_RepeatedHoldOutAssessParameterSet
           
 

Methods in de.jstacs.classifier.assessment that return ParameterSet
static ParameterSet[] ClassifierAssessmentAssessParameterSet.getAllClassifierAssessmentAssessParameterSets()
           
 

Uses of ParameterSet in de.jstacs.classifier.scoringFunctionBased
 

Subclasses of ParameterSet in de.jstacs.classifier.scoringFunctionBased
 class ScoreClassifierParameterSet
          The parameter set for any CL classifier.
 

Uses of ParameterSet in de.jstacs.classifier.scoringFunctionBased.cll
 

Subclasses of ParameterSet in de.jstacs.classifier.scoringFunctionBased.cll
 class CLLClassifierParameterSet
          This class contains the parameters for the CLLClassifier.
 

Uses of ParameterSet in de.jstacs.data
 

Subclasses of ParameterSet in de.jstacs.data
static class Alphabet.AlphabetParameterSet
          The super class for the ParameterSet of any Alphabet.
 class AlphabetContainerParameterSet
          Class for the ParameterSet of an AlphabetContainer.
static class AlphabetContainerParameterSet.AlphabetArrayParameterSet
          Class for the parameters of an array of Alphabets of defined length.
static class AlphabetContainerParameterSet.SectionDefinedAlphabetParameterSet
          Class for the parameters of an array of Alphabets where each alphabet may be used for one or more sections of positions.
 

Uses of ParameterSet in de.jstacs.data.alphabets
 

Subclasses of ParameterSet in de.jstacs.data.alphabets
static class ContinuousAlphabet.ContinuousAlphabetParameterSet
          Class for the ParameterSet of a ContinuousAlphabet.
static class DiscreteAlphabet.DiscreteAlphabetParameterSet
          Class for the ParameterSet of a DiscreteAlphabet.
static class DNAAlphabet.DNAAlphabetParameterSet
          The parameter set for an DNA alphabet.
 

Uses of ParameterSet in de.jstacs.io
 

Methods in de.jstacs.io with parameters of type ParameterSet
static InstantiableFromParameterSet ParameterSetParser.getInstanceFromParameterSet(ParameterSet pars)
          Returns an instance of a subclass of InstantiableFromParameterSet that can be instantiated by the ParameterSet pars.
static InstantiableFromParameterSet ParameterSetParser.getInstanceFromParameterSet(ParameterSet pars, Class instanceClass)
          Returns an instance of a subclass of InstantiableFromParameterSet that can be instantiated by the ParameterSet pars.
 

Uses of ParameterSet in de.jstacs.models.discrete
 

Subclasses of ParameterSet in de.jstacs.models.discrete
 class DGMParameterSet
          The super ParameterSet for any ParameterSet of a DiscreteGraphicalModel.
 

Uses of ParameterSet in de.jstacs.models.discrete.inhomogeneous.parameters
 

Subclasses of ParameterSet in de.jstacs.models.discrete.inhomogeneous.parameters
 class BayesianNetworkModelParameterSet
          The ParameterSet for the class BayesianNetworkModel.
 class FSDAGMParameterSet
          The class for the parameters of a FSDAGModel.
 class IDGMParameterSet
          This is the abstract container of parameters that is root container for all inhomogeneous discrete graphical model parameter containers.
 

Uses of ParameterSet in de.jstacs.parameters
 

Subclasses of ParameterSet in de.jstacs.parameters
 class ArrayParameterSet
          Class for a ParameterSet that consists of a length-Parameter that defines the length of the array and an array of ParameterSetContainers of this length.
 class ExpandableParameterSet
          A class for a ParameterSet that can be expanded by additional Parameters at runtime.
 class InstanceParameterSet
          Abstract class for a ParameterSet containing all parameters necessary to construct an Object that implements InstantiableFromParameterSet.
 class SimpleParameterSet
          Class for a ParameterSet that is constructed from an array of Parameters and thus does nothing in the loadParameters()-method.
 

Fields in de.jstacs.parameters declared as ParameterSet
protected  ParameterSet Parameter.neededReference
          In cases, when the validity of some ParameterSet depends on the value of this Parameter, this variable holds a reference to that ParameterSet
protected  ParameterSet CollectionParameter.parameters
          The internal ParameterSet that holds the possible values
protected  ParameterSet Parameter.parent
          If this Parameter is enclosed in a ParameterSet, this variable holds a reference to that ParameterSet.
protected  ParameterSet ExpandableParameterSet.template
          The template for each ParameterSet
 

Methods in de.jstacs.parameters that return ParameterSet
 ParameterSet ParameterSet.clone()
          Creates a full clone (deep copy) of this ParameterSet.
 ParameterSet RangeParameter.getNeededReference()
           
 ParameterSet Parameter.getNeededReference()
          Returns a reference to a ParameterSet whose hasDefaultOrIsSet() method depends on the value of this Parameter.
 ParameterSet CollectionParameter.getParametersInCollection()
          Returns the possible values in this collection
 ParameterSet Parameter.getParent()
          Returns a reference to the ParameterSet enclosing this Parameter.
 ParameterSet ParameterSetContainer.getValue()
           
 

Methods in de.jstacs.parameters with parameters of type ParameterSet
 boolean ExpandableParameterSet.replaceContentWith(ParameterSet[] paramSetArray)
          First removes all previous added ParameterSetContainer and afterwards adds all given ParameterSets (in the given order) enclosed in new ParameterSetContainers.
 void RangeParameter.setNeededReference(ParameterSet reference)
           
 void Parameter.setNeededReference(ParameterSet reference)
          Sets an internal reference to a ParameterSet whose validity depends on the value of this Parameter.
 void Parameter.setParent(ParameterSet parent)
          Sets the reference of the enclosing ParameterSet of this Parameter to parent.
 

Constructors in de.jstacs.parameters with parameters of type ParameterSet
ArrayParameterSet(Class instanceClass, ParameterSet template, String nameTemplate, String commentTemplate)
          Creates a new ArrayParameterSet from a Class that can be instantiated using this ArrayParameterSet and templates for the ParameterSet in each element of the array, the name and the comment that are displayed for the ParameterSetContainers enclosing the ParameterSets.
ArrayParameterSet(Class instanceClass, ParameterSet template, String nameTemplate, String commentTemplate, String lengthName, String lengthComment, NumberValidator<Integer> allowedLengths)
          Creates a new ArrayParameterSet from a Class that can be instantiated using this ArrayParameterSet and templates for the ParameterSet in each element of the array, the name and the comment that are displayed for the ParameterSetContainers enclosing the ParameterSets.
CollectionParameter(ParameterSet[] values, String name, String comment, boolean required)
          Constructor for a CollectionParameter from an array of ParameterSets.
CollectionParameter(ParameterSet options, int selected, int defaultSelected, boolean userSelected, String name, String comment, boolean required, DataType datatype, String errorMessage, boolean rangeable)
          Creates a new CollectionParameter from the necessary field.
ExpandableParameterSet(Class instanceClass, ParameterSet[] templateAndContent, String nameTemplate, String commentTemplate)
          Creates a new ExpandableParameterSet from a ParameterSet-array.
ExpandableParameterSet(Class alternativeInstanceClass, ParameterSet template, String nameTemplate, String commentTemplate)
          Creates a new ExpandableParameterSet from a Class that can be instantiated using this ExpandableParameterSet and templates for the ParameterSet in each element of the array, the name and the comment that are displayed for the ParameterSetContainers enclosing the ParameterSets.
ExpandableParameterSet(Class alternativeInstanceClass, ParameterSet template, String nameTemplate, String commentTemplate, int initCount)
          Creates a new ExpandableParameterSet from a Class that can be instantiated using this ExpandableParameterSet and templates for the ParameterSet in each element of the array, the name and the comment that are displayed for the ParameterSetContainers enclosing the ParameterSets.
MultiSelectionCollectionParameter(ParameterSet[] values, String name, String comment, boolean required)
          Creates a new MultiSelectionCollectionParameter from an array of ParameterSets.
MultiSelectionCollectionParameter(ParameterSet options, boolean[] selected, boolean[] defaultSelected, boolean userSelected, String name, String comment, boolean required, DataType datatype, String errorMessage, int current, boolean makeRanged)
          Creates a new MultiSelectionCollectionParameter from the necessary field.
ParameterSetContainer(String name, String comment, ParameterSet content)
          Creates an new ParameterSetContainer out of a ParameterSet.