Uses of Class
de.jstacs.data.sequences.WrongSequenceTypeException

Packages that use WrongSequenceTypeException
de.jstacs.data.sequences Provides classes for representing sequences. 
de.jstacs.models.discrete.homogeneous   
 

Uses of WrongSequenceTypeException in de.jstacs.data.sequences
 

Constructors in de.jstacs.data.sequences that throw WrongSequenceTypeException
ArbitrarySequence(AlphabetContainer alphabetContainer, double[] content)
          Creates a new ArbitrarySequence from an array of double-encoded alphabet symbols.
ArbitrarySequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, String sequence, String delim)
          Creates a new ArbitrarySequence from a String representation using the delimiter delim.
ArbitrarySequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, SymbolExtractor extractor)
          Creates a new ArbitrarySequence from a SymbolExtractor.
ArbitrarySequence(AlphabetContainer alphabetContainer, String sequence)
          Creates a new ArbitrarySequence from a String representation using the default delimiter.
ByteSequence(AlphabetContainer alphabetContainer, byte[] content)
          Creates a new ByteSequence from an array of byte- encoded alphabet symbols.
ByteSequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, String sequence, String delim)
          Creates a new ByteSequence from a String representation using the delimiter delim.
ByteSequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, SymbolExtractor extractor)
          Creates a new ByteSequence from a SymbolExtractor.
ByteSequence(AlphabetContainer alphabetContainer, String sequence)
          Creates a new ByteSequence from a String representation using the default delimiter.
IntSequence(AlphabetContainer alphabetContainer, int... content)
          Creates a new IntSequence from an array of int- encoded alphabet symbols.
IntSequence(AlphabetContainer alphabetContainer, int[] content, int start, int length)
          Creates a new IntSequence from a part of the array of int- encoded alphabet symbols.
IntSequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, String sequence, String delim)
          Creates a new IntSequence from a String representation using the delimiter delim.
IntSequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, SymbolExtractor extractor)
          Creates a new IntSequence from a SymbolExtractor.
IntSequence(AlphabetContainer alphabetContainer, String sequence)
          Creates a new IntSequence from a String representation using the default delimiter.
ShortSequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, String sequence, String delim)
          Creates a new ShortSequence from a String representation using the delimiter delim.
ShortSequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, SymbolExtractor extractor)
          Creates a new ShortSequence from a SymbolExtractor.
ShortSequence(AlphabetContainer alphabetContainer, short[] content)
          Creates a new ShortSequence from an array of short- encoded alphabet symbols.
ShortSequence(AlphabetContainer alphabetContainer, String sequence)
          Creates a new ShortSequence from a String representation using the default delimiter.
SparseSequence(AlphabetContainer alphCon, String seq)
          Creates a new SparseSequence from a String representation.
SparseSequence(AlphabetContainer alphCon, SymbolExtractor se)
          Creates a new SparseSequence from a SymbolExtractor.
 

Uses of WrongSequenceTypeException in de.jstacs.models.discrete.homogeneous
 

Methods in de.jstacs.models.discrete.homogeneous that throw WrongSequenceTypeException
 Sample HomogeneousModel.emitSample(int no, int... length)
          Creates a Sample of a given number of Sequences from a trained homogeneous model.
protected abstract  Sequence HomogeneousModel.getRandomSequence(Random r, int length)
          This method creates a random Sequence from a trained homogeneous model.
protected  Sequence HomogeneousMM.getRandomSequence(Random r, int length)