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See:
Description
Interface Summary | |
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Alignment.Costs | The general interface for the costs of an alignment. |
Class Summary | |
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Alignment | Class for gapped global alignments using the extended Needleman-Wunsch algorithm. |
Alignment.SimpleCosts | Class for simple costs with costs mismatch for a mismatch,
costs start to start a new gap, costs elong to
elongate a gap by one position and costs of 0 for a match. |
Alignment.StringAlignment | Class for the representation of an alignment of two String s. |
Enum Summary | |
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Alignment.Costs.Direction | The direction of the predecessor in the DP (dynamic programming)-matrix. |
Provides classes for algorithms on graphs. This includes maximum spanning trees of directed and undirected weighted graphs.
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