Uses of Class
de.jstacs.data.sequences.WrongSequenceTypeException

Packages that use WrongSequenceTypeException
de.jstacs.data.sequences Provides classes for representing sequences. 
de.jstacs.models.discrete.homogeneous   
 

Uses of WrongSequenceTypeException in de.jstacs.data.sequences
 

Methods in de.jstacs.data.sequences that throw WrongSequenceTypeException
static Sample SparseSequence.getSample(AlphabetContainer con, AbstractStringExtractor... se)
          This method allows to create a Sample containing SparseSequences.
 

Constructors in de.jstacs.data.sequences that throw WrongSequenceTypeException
ArbitrarySequence(AlphabetContainer alphabetContainer, double[] content)
          Creates a new ArbitrarySequence from an array of double-encoded alphabet symbols.
ArbitrarySequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, String sequence, String delim)
          Creates a new ArbitrarySequence from a String representation using the delimiter delim.
ArbitrarySequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, SymbolExtractor extractor)
          Creates a new ArbitrarySequence from a SymbolExtractor.
ArbitrarySequence(AlphabetContainer alphabetContainer, String sequence)
          Creates a new ArbitrarySequence from a String representation using the default delimiter.
ByteSequence(AlphabetContainer alphabetContainer, byte[] content)
          Creates a new ByteSequence from an array of byte- encoded alphabet symbols.
ByteSequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, String sequence, String delim)
          Creates a new ByteSequence from a String representation using the delimiter delim.
ByteSequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, SymbolExtractor extractor)
          Creates a new ByteSequence from a SymbolExtractor.
ByteSequence(AlphabetContainer alphabetContainer, String sequence)
          Creates a new ByteSequence from a String representation using the default delimiter.
IntSequence(AlphabetContainer alphabetContainer, int... content)
          Creates a new IntSequence from an array of int- encoded alphabet symbols.
IntSequence(AlphabetContainer alphabetContainer, int[] content, int start, int length)
          Creates a new IntSequence from a part of the array of int- encoded alphabet symbols.
IntSequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, String sequence, String delim)
          Creates a new IntSequence from a String representation using the delimiter delim.
IntSequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, SymbolExtractor extractor)
          Creates a new IntSequence from a SymbolExtractor.
IntSequence(AlphabetContainer alphabetContainer, String sequence)
          Creates a new IntSequence from a String representation using the default delimiter.
ShortSequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, String sequence, String delim)
          Creates a new ShortSequence from a String representation using the delimiter delim.
ShortSequence(AlphabetContainer alphabetContainer, SequenceAnnotation[] annotation, SymbolExtractor extractor)
          Creates a new ShortSequence from a SymbolExtractor.
ShortSequence(AlphabetContainer alphabetContainer, short[] content)
          Creates a new ShortSequence from an array of short- encoded alphabet symbols.
ShortSequence(AlphabetContainer alphabetContainer, String sequence)
          Creates a new ShortSequence from a String representation using the default delimiter.
SparseSequence(AlphabetContainer alphCon, String seq)
          Creates a new SparseSequence from a String representation.
SparseSequence(AlphabetContainer alphCon, SymbolExtractor se)
          Creates a new SparseSequence from a SymbolExtractor.
 

Uses of WrongSequenceTypeException in de.jstacs.models.discrete.homogeneous
 

Methods in de.jstacs.models.discrete.homogeneous that throw WrongSequenceTypeException
 Sample HomogeneousModel.emitSample(int no, int... length)
          Creates a Sample of a given number of Sequences from a trained homogeneous model.
protected abstract  Sequence HomogeneousModel.getRandomSequence(Random r, int length)
          This method creates a random Sequence from a trained homogeneous model.
protected  Sequence HomogeneousMM.getRandomSequence(Random r, int length)