All Classes

Packages
de.jstacs
de.jstacs.algorithms.alignment
de.jstacs.algorithms.alignment.cost
de.jstacs.algorithms.graphs
de.jstacs.algorithms.graphs.tensor
de.jstacs.algorithms.optimization
de.jstacs.algorithms.optimization.termination
de.jstacs.classifiers
de.jstacs.classifiers.assessment
de.jstacs.classifiers.differentiableSequenceScoreBased
de.jstacs.classifiers.differentiableSequenceScoreBased.gendismix
de.jstacs.classifiers.differentiableSequenceScoreBased.logPrior
de.jstacs.classifiers.differentiableSequenceScoreBased.msp
de.jstacs.classifiers.differentiableSequenceScoreBased.sampling
de.jstacs.classifiers.performanceMeasures
de.jstacs.classifiers.trainSMBased
de.jstacs.classifiers.utils
de.jstacs.data
de.jstacs.data.alphabets
de.jstacs.data.bioJava
de.jstacs.data.sequences
de.jstacs.data.sequences.annotation
de.jstacs.io
de.jstacs.motifDiscovery
de.jstacs.motifDiscovery.history
de.jstacs.parameters
de.jstacs.parameters.validation
de.jstacs.results
de.jstacs.sampling
de.jstacs.sequenceScores
de.jstacs.sequenceScores.differentiable
de.jstacs.sequenceScores.differentiable.logistic
de.jstacs.sequenceScores.statisticalModels
de.jstacs.sequenceScores.statisticalModels.differentiable
de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels
de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels.structureLearning.measures
de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels.structureLearning.measures.btMeasures
de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels.structureLearning.measures.pmmMeasures
de.jstacs.sequenceScores.statisticalModels.differentiable.homogeneous
de.jstacs.sequenceScores.statisticalModels.differentiable.mixture
de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif
de.jstacs.sequenceScores.statisticalModels.trainable
de.jstacs.sequenceScores.statisticalModels.trainable.discrete
de.jstacs.sequenceScores.statisticalModels.trainable.discrete.homogeneous
de.jstacs.sequenceScores.statisticalModels.trainable.discrete.homogeneous.parameters
de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous
de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous.parameters
de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous.shared
de.jstacs.sequenceScores.statisticalModels.trainable.hmm
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.continuous
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.discrete
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.training
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.transitions
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.transitions.elements
de.jstacs.sequenceScores.statisticalModels.trainable.mixture
de.jstacs.sequenceScores.statisticalModels.trainable.mixture.motif
de.jstacs.sequenceScores.statisticalModels.trainable.mixture.motif.positionprior
de.jstacs.sequenceScores.statisticalModels.trainable.phylo
de.jstacs.sequenceScores.statisticalModels.trainable.phylo.parser
de.jstacs.utils
de.jstacs.utils.galaxy
de.jstacs.utils.random