**BismarkConvertToPromoter** converts the Bismark output file to promoter coordinates.

The input of **BismarkConvertToPromoter** is 
1. a Bismark coverage output file, which contains tab-separated columns: 
``chromosome, start_position, end_position, methylation_percentage, count_methylated, count_unmethylated`` and 
2. the promoter sequences in FastA format with headers like:
``> id chromosomeName:start-end:strand``
e.g.
``> Os01g01010.1 Chr1:2602-3102:+``.

If you experience problems using **BismarkConvertToPromoter**, please contact_ us.

.. _contact: mailto:grau@informatik.uni-halle.de