**NormalizePileupOutput** normalizes the pileup output file, that contains the coverage with 5’ ATAC-seq or DNase-seq reads at each position. It normalizes the coverage relative to the mean of a 10000 bp sliding window.

The input of **NormalizePileupOutput** is a pileup output file from **Chromatin pileup** tool.

If you experience problems using **NormalizePileupOutput**, please contact_ us.

.. _contact: mailto:grau@informatik.uni-halle.de