**Chromatin pileup** takes as input a BAM file of mapped reads from an DNase-seq or ATAC-seq experiment 
and computes a coverage pileup of 5' ends of mapped reads, 
and outputs a simple tab-separated file with columns: 
``chromosome, position,`` and ``pileup value`` (number of reads with a 5' end at this position).

If you experience problems using **Chromatin pileup**, please contact_ us.

.. _contact: mailto:grau@informatik.uni-halle.de