Uses of Class
de.jstacs.parameters.Parameter

Packages that use Parameter

Package	Description
de.jstacs.io	Provides classes for reading data from and writing to a file and storing a number of datatypes, including all primitives, arrays of primitives, and Storables to an XML-representation.
de.jstacs.parameters	This package provides classes for parameters that establish a general convention for the description of parameters as defined in the Parameter-interface.
de.jstacs.tools
de.jstacs.tools.ui.galaxy

Uses of Parameter in de.jstacs.io

Methods in de.jstacs.io with parameters of type Parameter

Modifier and Type	Method and Description
static boolean	ParameterSetParser.getBooleanFromParameter(Parameter par) Returns the boolean which is the value of the Parameter par.
static byte	ParameterSetParser.getByteFromParameter(Parameter par) Returns the byte which is the value of the Parameter par.
static double	ParameterSetParser.getDoubleFromParameter(Parameter par) Returns the double which is the value of the Parameter par.
static float	ParameterSetParser.getFloatFromParameter(Parameter par) Returns the float which is the value of the Parameter par.
static int	ParameterSetParser.getIntFromParameter(Parameter par) Returns the int which is the value of the Parameter par.
static long	ParameterSetParser.getLongFromParameter(Parameter par) Returns the long which is the value of the Parameter par.
static short	ParameterSetParser.getShortFromParameter(Parameter par) Returns the short which is the value of the Parameter par.
static String	ParameterSetParser.getStringFromParameter(Parameter par) Returns the String which is the value of the Parameter par.

Uses of Parameter in de.jstacs.parameters

Subclasses of Parameter in de.jstacs.parameters

Modifier and Type	Class and Description
class	AbstractSelectionParameter Class for a collection parameter, i.e.
class	EnumParameter This class implements a SelectionParameter based on an Enum.
class	FileParameter Class for a Parameter that represents a local file.
class	MultiSelectionParameter Class for a Parameter that provides a collection of possible values.
class	ParameterSetContainer Class for a ParameterSetContainer that contains a ParameterSet as value.
class	RangeParameter Class for a parameter wrapper that allows SimpleParameters to be set to a set of values. These values may be given either as a list of values separated by spaces, as a range between a first and a last value with a given number of steps between these values, or a single value.
class	SelectionParameter Class for a collection parameter, i.e.
class	SimpleParameter Class for a "simple" parameter.

Fields in de.jstacs.parameters declared as Parameter

Modifier and Type	Field and Description
protected Parameter	SequenceScoringParameterSet.alphabet The alphabet the model works on
protected Parameter	SequenceScoringParameterSet.length The length of sequences the model can work on or 0 for arbitrary length
protected Parameter	ParameterSet.parent If this ParameterSet is contained in a Parameter, this variable holds a reference to that Parameter.

Methods in de.jstacs.parameters that return Parameter

Modifier and Type	Method and Description
Parameter	Parameter.clone()
Parameter	SequenceScoringParameterSet.getParameterAt(int i)
Parameter	ParameterSet.getParameterAt(int i) Returns the Parameter at position i.
Parameter	ArrayParameterSet.getParameterAt(int i)
Parameter	ParameterSet.getParameterForName(String name) Returns the Parameter with name name.
Parameter	ParameterSetTagger.getParameterFromTag(String tag) This method returns the Parameter specified by the tag
Parameter	ParameterSet.getParent() Returns the enclosing Parameter of this ParameterSet or null if none exists.
Parameter	SimpleParameter.getRangedInstance()
Parameter	Rangeable.getRangedInstance() Returns an instance of RangeIterator that has the same properties as the current instance, but accepts a range or list of values.

Methods in de.jstacs.parameters with parameters of type Parameter

Modifier and Type	Method and Description
void	ParameterSet.ParameterList.add(int idx, Parameter p)
void	ParameterSet.ParameterList.add(Parameter... p)
boolean	Parameter.isComparable(Parameter p) This method checks whether the given Parameter is comparable to the current instance, i.e.
boolean	AbstractSelectionParameter.isComparable(Parameter p)
void	ParameterSet.ParameterList.set(int idx, Parameter p)
void	ParameterSet.setParent(Parameter parent) Sets the enclosing ParameterSetContainer of this ParameterSet to parent.

Method parameters in de.jstacs.parameters with type arguments of type Parameter

Modifier and Type	Method and Description
String	ParameterSetTagger.toString(Comparator<Map.Entry<String,ComparableElement<Parameter,Integer>>> ec) This method allows to get a String representation where the tagged parameters are sorted in some specific way.

Constructors in de.jstacs.parameters with parameters of type Parameter

Constructor and Description
ParameterSet(Parameter... parameters) Constructs a ParameterSet out of an array of Parameters.
SimpleParameterSet(Parameter... parameters) Creates a new SimpleParameterSet from an array of Parameters.

Constructor parameters in de.jstacs.parameters with type arguments of type Parameter

Constructor and Description
ParameterSet(ArrayList<Parameter> parameters) Constructs a ParameterSet out of an ArrayList of Parameters.

Uses of Parameter in de.jstacs.tools

Subclasses of Parameter in de.jstacs.tools

Modifier and Type	Class and Description
class	DataColumnParameter SimpleParameter that represents a data column parameter in Galaxy and JstacsFX.

Uses of Parameter in de.jstacs.tools.ui.galaxy

Subclasses of Parameter in de.jstacs.tools.ui.galaxy

Modifier and Type	Class and Description
class	MultilineSimpleParameter An extension of SimpleParameter that renders as a textarea in Galaxy, which is only suitable for DataType.STRINGs.