de.jstacs.tools.ui.galaxy

Class Galaxy

java.lang.Object

de.jstacs.tools.ui.galaxy.Galaxy

public class Galaxy
extends Object

Class for generating a generic Galaxy interface for a set of JstacsTools. Internally, it uses much of the infrastructure provided by GalaxyAdaptor. This class belongs to the trinity of Galaxy, CLI, and JavaFX interface that may all be created from a set of JstacsTools.

Author:

Jan Grau

Constructor Summary

Constructors

Constructor and Description
Galaxy(String vmargs, boolean configThreads, JstacsTool... tools) Creates a new Galaxy interface from a set of JstacsTools.

Method Summary

Modifier and Type	Method and Description
void	run(String[] args) Runs this Galaxy interface with the supplied arguments.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Galaxy

public Galaxy(String vmargs,
              boolean configThreads,
              JstacsTool... tools)

Creates a new Galaxy interface from a set of JstacsTools.

Parameters:

vmargs - the arguments supplied to the JavaVM when running within Galaxy

configThreads - if threads should be configured

tools - the tools that should be displayed

See Also:

GalaxyAdaptor.parse(String[], boolean)

Method Detail

run

public void run(String[] args)
         throws Exception

Runs this Galaxy interface with the supplied arguments. If the first argument equals "--create", the Galaxy config files for the tools are created. Otherwise, the tools selected by the supplied arguments is run with these arguments.

Parameters:

args - the arguments

Throws:

Exception - if the configuration could not be created or the tool threw an exception