{"batchcomplete":"","continue":{"lecontinue":"20200319125711|14626","continue":"-||"},"query":{"logevents":[{"logid":14636,"ns":0,"title":"GeMoSeq-Examples","pageid":109,"logpage":109,"params":{},"type":"create","action":"create","user":"Grau","timestamp":"2025-11-18T16:05:01Z","comment":"Created page with \" == GeMoSeq example run ==  We use a data set for yeast for an example run of GeMoSeq. As input of GeMoSeq, we need a reference genome and a library of reads mapped to that reference. Here, we use the [https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/146/045/GCF_000146045.2_R64/GCF_000146045.2_R64_genomic.fna.gz ''S. cerevisiae'' S288C reference genome R64] available from NCBI. For later evaluation of GeMoSeq prediction results, we also download the [https://ftp.ncbi.nlm...\""},{"logid":14635,"ns":0,"title":"GeMoRNA","pageid":108,"logpage":107,"params":{"target_ns":0,"target_title":"GeMoSeq"},"type":"move","action":"move","user":"Grau","timestamp":"2025-11-11T16:00:50Z","comment":""},{"logid":14634,"ns":0,"title":"GeMoRNA","pageid":108,"logpage":107,"params":{},"type":"create","action":"create","user":"Grau","timestamp":"2024-11-08T12:46:02Z","comment":"Created blank page"},{"logid":14633,"ns":0,"title":"DerTALEv2","pageid":106,"logpage":106,"params":{},"type":"create","action":"create","user":"Grau","timestamp":"2024-05-24T21:54:22Z","comment":"Created page with \"DerTALEv2 filters predictions of TALE target boxes by the presence of differentially expressed regions in a defined vicinity around a predicted target box.  As input, DerTALEv2 requires a list of target box predictions as generated by the PrediTALE tool, which is included in the DerTALEv2 JAR file.  For determining differentially expressed regions, DerTALEv2 also needs mapped RNA-seq data after Xanthomonas infection (treatment) and control in BAM format, which is the sta...\""},{"logid":14632,"ns":6,"title":"File:GeMoMa-manual.pdf","pageid":97,"logpage":97,"params":{"img_sha1":"qi59zlkx63pw2hb6ah6wm4dndkrkmhf","img_timestamp":"2021-10-08T13:17:43Z"},"type":"upload","action":"overwrite","user":"Keilwagen","timestamp":"2021-10-08T13:17:43Z","comment":"version 1.8, real example, Analyzer, BUSCORecomputer, SyntenyChecker"},{"logid":14631,"ns":6,"title":"File:EpiTALE 256.png","pageid":105,"logpage":105,"params":{},"type":"create","action":"create","user":"Grau","timestamp":"2021-05-10T22:35:44Z","comment":""},{"logid":14630,"ns":6,"title":"File:EpiTALE 256.png","pageid":105,"logpage":105,"params":{"img_sha1":"if605beti0alnlfw9gpe94u5tufklbg","img_timestamp":"2021-05-10T22:35:44Z"},"type":"upload","action":"upload","user":"Grau","timestamp":"2021-05-10T22:35:44Z","comment":""},{"logid":14629,"ns":0,"title":"EpiTALE","pageid":104,"logpage":104,"params":{},"type":"create","action":"create","user":"Grau","timestamp":"2021-05-10T08:05:43Z","comment":"Created page with \"== Tools ==  === Bed2Bismark ===  '''Bed2Bismark''' Converts methylation information in bedMethyl format to bismark format.  The input of '''Bed2Bismark''' is a file in bedMet...\""},{"logid":14628,"ns":6,"title":"File:GeMoMa-manual.pdf","pageid":97,"logpage":97,"params":{"img_sha1":"cmrfuazdm6r8nai57o3kkz6zyvtpeqz","img_timestamp":"2020-07-30T04:42:18Z"},"type":"upload","action":"overwrite","user":"Keilwagen","timestamp":"2020-07-30T04:42:18Z","comment":"version 1.7: runtime, additional module, ..."},{"logid":14627,"ns":0,"title":"GeMoMa-Docs","pageid":103,"logpage":103,"params":{},"type":"create","action":"create","user":"Keilwagen","timestamp":"2020-07-30T04:13:23Z","comment":"initial commit: new documentation since version 1.7"}]}}