public static enum Alignment.AlignmentType extends Enum<Alignment.AlignmentType>
Enum Constant and Description |
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FREE_SHIFT
The free shift alignment allows gaps at the begin and at the end of both sequence without any costs.
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GLOBAL
The global version of an alignment aligns two complete sequences.
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LOCAL
The local version of an alignment aligns a subsequence of the first sequence with a subsequence of the second sequence.
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SEMI_GLOBAL
The semi global version of an alignment allows gaps at the begin and at the end of the second sequence without any costs.
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Modifier and Type | Method and Description |
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static Alignment.AlignmentType |
valueOf(String name)
Returns the enum constant of this type with the specified name.
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static Alignment.AlignmentType[] |
values()
Returns an array containing the constants of this enum type, in
the order they are declared.
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public static final Alignment.AlignmentType GLOBAL
public static final Alignment.AlignmentType SEMI_GLOBAL
public static final Alignment.AlignmentType FREE_SHIFT
public static final Alignment.AlignmentType LOCAL
public static Alignment.AlignmentType[] values()
for (Alignment.AlignmentType c : Alignment.AlignmentType.values()) System.out.println(c);
public static Alignment.AlignmentType valueOf(String name)
name
- the name of the enum constant to be returned.IllegalArgumentException
- if this enum type has no constant with the specified nameNullPointerException
- if the argument is null