public class AucPR extends PRCurve implements NumericalPerformanceMeasure
PRCurveParameterSet.ParameterListminStepSize, NAMEerrorMessage, parameters, parent| Constructor and Description |
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AucPR()
Constructs a new instance of the performance measure
AucPR. |
AucPR(StringBuffer xml)
The standard constructor for the interface
Storable. |
| Modifier and Type | Method and Description |
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NumericalResultSet |
compute(double[][][] classSpecificScores)
This method allows to compute the performance measure of given class specific scores.
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NumericalResultSet |
compute(double[][][] classSpecificScores,
double[][] weights)
This method allows to compute the performance measure of given class specific scores.
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NumericalResultSet |
compute(double[] sortedScoresClass0,
double[] sortedScoresClass1)
This method allows to compute the performance measure of given sorted score ratios.
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NumericalResultSet |
compute(double[] sortedScoresClass0,
double[] weightsClass0,
double[] sortedScoresClass1,
double[] weightsClass1)
This method allows to compute the performance measure of given sorted score ratios.
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String |
getName()
The method returns the name of the performance measure.
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getAllowedNumberOfClassesfindSplitIndex, findThreshold, getCollectionOfAllMeasures, getWeight, simpleWeightsclone, fromGalaxy, fromXML, getAllParameterNames, getComment, getComment, getErrorMessage, getIndex, getName, getName, getNumberOfParameters, getParameterAt, getParameterForName, getParent, hasDefaultOrIsSet, initParameterList, initParameterList, isAtomic, isComparable, parametersLoaded, reset, setParent, toGalaxy, toXMLequals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, waitgetAllowedNumberOfClassespublic AucPR()
AucPR.public AucPR(StringBuffer xml) throws NonParsableException
Storable.
Constructs a AucPR out of an XML representation.xml - the XML representation as StringBufferNonParsableException - if the AucPR could not be reconstructed out of
the StringBuffer xmlpublic NumericalResultSet compute(double[] sortedScoresClass0, double[] sortedScoresClass1)
PerformanceMeasurecompute in interface NumericalPerformanceMeasurecompute in interface PerformanceMeasurecompute in class AbstractPerformanceMeasuresortedScoresClass0 - the sorted score ratios of class 0sortedScoresClass1 - the sorted score ratios of class 1PerformanceMeasure.compute(double[], double[], double[], double[])public NumericalResultSet compute(double[][][] classSpecificScores)
PerformanceMeasurecompute in interface NumericalPerformanceMeasurecompute in interface PerformanceMeasurecompute in class AbstractPerformanceMeasureclassSpecificScores - the scores; first dimension = data sets, second dimension = sequences of the data set, third dimension classes of the classifierPerformanceMeasure.compute(double[][][], double[][])public NumericalResultSet compute(double[] sortedScoresClass0, double[] weightsClass0, double[] sortedScoresClass1, double[] weightsClass1)
PerformanceMeasurecompute in interface NumericalPerformanceMeasurecompute in interface PerformanceMeasurecompute in class PRCurvesortedScoresClass0 - the sorted score ratios of class 0weightsClass0 - the weights of the sequences of class 0 sorted along with the scores sortedScoresClass0sortedScoresClass1 - the sorted score ratios of class 1weightsClass1 - the weights of the sequences of class 1 sorted along with the scores sortedScoresClass1ToolBox.sortAlongWith(double[], double[][])public NumericalResultSet compute(double[][][] classSpecificScores, double[][] weights)
PerformanceMeasurecompute in interface NumericalPerformanceMeasurecompute in interface PerformanceMeasurecompute in class AbstractTwoClassPerformanceMeasureclassSpecificScores - the scores; first dimension = data sets, second dimension = sequences of the data set, third dimension classes of the classifierweights - the weights for all sequence in all data setspublic String getName()
PerformanceMeasuregetName in interface PerformanceMeasuregetName in class PRCurve