SignificantMotifOccurrencesFinder.RandomSeqType

java.lang.Object
- java.lang.Enum<SignificantMotifOccurrencesFinder.RandomSeqType>
- - de.jstacs.motifDiscovery.SignificantMotifOccurrencesFinder.RandomSeqType

All Implemented Interfaces:

Serializable, Comparable<SignificantMotifOccurrencesFinder.RandomSeqType>

Enclosing class:

SignificantMotifOccurrencesFinder
```
public static enum SignificantMotifOccurrencesFinder.RandomSeqType
extends Enum<SignificantMotifOccurrencesFinder.RandomSeqType>
```
Author:

Jan Grau, Jens Keilwagen

Enum Constant Summary

Enum Constants
Enum Constant and Description
`BACKGROUND` A enum constant that indicates to use the a background set to determine the significance level.
`hMM0` A enum constant that indicates to use sequences drawn from a homogeneous Markov model of order 0 to determine the significance level.
`hMM1` A enum constant that indicates to use sequences drawn from a homogeneous Markov model of order 1 to determine the significance level.
`hMM2` A enum constant that indicates to use sequences drawn from a homogeneous Markov model of order 3 to determine the significance level.
`hMM3` A enum constant that indicates to use sequences drawn from a homogeneous Markov model of order 3 to determine the significance level.
`hMM4` A enum constant that indicates to use sequences drawn from a homogeneous Markov model of order 4 to determine the significance level.
`hMM5` A enum constant that indicates to use sequences drawn from a homogeneous Markov model of order 5 to determine the significance level.
`PERMUTED` A enum constant that indicates to use permuted instances of the sequence to determine the significance level.

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`int`	`getOrder()` This method returns the Markov order.
`static SignificantMotifOccurrencesFinder.RandomSeqType`	`valueOf(String name)` Returns the enum constant of this type with the specified name.
`static SignificantMotifOccurrencesFinder.RandomSeqType[]`	`values()` Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum
clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait

- Enum Constant Detail
  - BACKGROUND
```
public static final SignificantMotifOccurrencesFinder.RandomSeqType BACKGROUND
```
    A enum constant that indicates to use the a background set to determine the significance level.
  - PERMUTED
```
public static final SignificantMotifOccurrencesFinder.RandomSeqType PERMUTED
```
    A enum constant that indicates to use permuted instances of the sequence to determine the significance level.
  - hMM0
```
public static final SignificantMotifOccurrencesFinder.RandomSeqType hMM0
```
    A enum constant that indicates to use sequences drawn from a homogeneous Markov model of order 0 to determine the significance level.
  - hMM1
```
public static final SignificantMotifOccurrencesFinder.RandomSeqType hMM1
```
    A enum constant that indicates to use sequences drawn from a homogeneous Markov model of order 1 to determine the significance level.
  - hMM2
```
public static final SignificantMotifOccurrencesFinder.RandomSeqType hMM2
```
    A enum constant that indicates to use sequences drawn from a homogeneous Markov model of order 3 to determine the significance level.
  - hMM3
```
public static final SignificantMotifOccurrencesFinder.RandomSeqType hMM3
```
    A enum constant that indicates to use sequences drawn from a homogeneous Markov model of order 3 to determine the significance level.
  - hMM4
```
public static final SignificantMotifOccurrencesFinder.RandomSeqType hMM4
```
    A enum constant that indicates to use sequences drawn from a homogeneous Markov model of order 4 to determine the significance level.
  - hMM5
```
public static final SignificantMotifOccurrencesFinder.RandomSeqType hMM5
```
    A enum constant that indicates to use sequences drawn from a homogeneous Markov model of order 5 to determine the significance level.
- Method Detail
  - values
```
public static SignificantMotifOccurrencesFinder.RandomSeqType[] values()
```
    Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
```
for (SignificantMotifOccurrencesFinder.RandomSeqType c : SignificantMotifOccurrencesFinder.RandomSeqType.values())
    System.out.println(c);
```
    Returns:
    
    an array containing the constants of this enum type, in the order they are declared
  - valueOf
```
public static SignificantMotifOccurrencesFinder.RandomSeqType valueOf(String name)
```
    Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
    
    Parameters:
    
    name - the name of the enum constant to be returned.
    
    Returns:
    
    the enum constant with the specified name
    
    Throws:
    
    IllegalArgumentException - if this enum type has no constant with the specified name
    
    NullPointerException - if the argument is null
  - getOrder
```
public int getOrder()
```
    This method returns the Markov order.
    
    Returns:
    
    the Markov order

Enum SignificantMotifOccurrencesFinder.RandomSeqType

Enum Constant Summary

Method Summary

Methods inherited from class java.lang.Enum

Methods inherited from class java.lang.Object

Enum Constant Detail

BACKGROUND

PERMUTED

hMM0

hMM1

hMM2

hMM3

hMM4

hMM5

Method Detail

values

valueOf

getOrder