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## Uses of Class
de.jstacs.results.Result

Packages that use Result
de.jstacs.classifier | This package provides the framework for any classifier.
de.jstacs.classifier.assessment | This package allows to assess classifiers.
de.jstacs.data.sequences.annotation | Provides the facilities to annotate `Sequence`s using a number of pre-defined annotation types, or additional implementations of the `SequenceAnnotation` class
de.jstacs.results | This package provides classes for results and sets of results.
de.jstacs.utils.galaxy |

Uses of Result in de.jstacs.classifier

Subclasses of Result in de.jstacs.classifier
`static class` | `AbstractScoreBasedClassifier.DoubleTableResult` This class is for `Result`s given as a table of `double` s.

Methods in de.jstacs.classifier that return types with arguments of type Result
`LinkedList<Result>` | `MeasureParameters.getAnnotation()` Returns the selected parameters and their values as a `LinkedList` of `Result`s.
`protected LinkedList<? extends Result>` | `MappingClassifier.getResults(Sample[] s, MeasureParameters params, boolean exceptionIfNotComputeable, boolean all)`
`protected LinkedList<? extends Result>` | `AbstractScoreBasedClassifier.getResults(Sample[] s, MeasureParameters params, boolean exceptionIfNotComputeable, boolean all)`
`protected LinkedList<? extends Result>` | `AbstractClassifier.getResults(Sample[] s, MeasureParameters params, boolean exceptionIfNotComputeable, boolean all)` This method computes the results for any evaluation of the classifier.

Uses of Result in de.jstacs.classifier.assessment

Methods in de.jstacs.classifier.assessment that return types with arguments of type Result
`Collection<Result>` | `Sampled_RepeatedHoldOutAssessParameterSet.getAnnotation()`
`Collection<Result>` | `RepeatedSubSamplingAssessParameterSet.getAnnotation()`
`Collection<Result>` | `RepeatedHoldOutAssessParameterSet.getAnnotation()`
`ArrayList<Result>` | `KFoldCVAssessParameterSet.getAnnotation()`
`Collection<Result>` | `ClassifierAssessmentAssessParameterSet.getAnnotation()` Returns a `Collection` of parameters containing informations about this `ClassifierAssessmentAssessParameterSet`.

Uses of Result in de.jstacs.data.sequences.annotation

Methods in de.jstacs.data.sequences.annotation that return Result
`Result[]` | `SequenceAnnotation.getAnnotations()` Returns the additional annotations of this `SequenceAnnotation` as given in the constructor.

Constructors in de.jstacs.data.sequences.annotation with parameters of type Result
`CisRegulatoryModuleAnnotation(String identifier, MotifAnnotation[] motifs, Result... additionalAnnotation)` Creates a new `CisRegulatoryModuleAnnotation` from a set of motifs and possibly additional annotations.
`IntronAnnotation(String identifier, SinglePositionSequenceAnnotation donor, SinglePositionSequenceAnnotation acceptor, Result... additionalAnnotation)` Creates a new `IntronAnnotation` from a donor `SinglePositionSequenceAnnotation` and an acceptor `SinglePositionSequenceAnnotation` and a set of additional annotations.
`LocatedSequenceAnnotation(int position, String type, String identifier, Result... results)` Creates a new `LocatedSequenceAnnotation` of type `type` with identifier `identifier` and additional annotation (that does not fit the `SequenceAnnotation` definitions) given as an array of `Result`s `result`.
`LocatedSequenceAnnotation(int position, String type, String identifier, SequenceAnnotation[] annotations, Result... additionalAnnotation)` Creates a new `LocatedSequenceAnnotation` of type `type` with identifier `identifier`, additional annotation (that does not fit the `SequenceAnnotation` definitions) given as an array of `Result`s `additionalAnnotation` and sub-annotations `annotations`.
`LocatedSequenceAnnotation(String type, String identifier, LocatedSequenceAnnotation[] annotations, Result... additionalAnnotation)` Creates a new `LocatedSequenceAnnotation` of type `type` with identifier `identifier`, additional annotation (that does not fit the `SequenceAnnotation` definitions) given as an array of `Result`s `additionalAnnotation` and sub-annotations `annotations`.
`LocatedSequenceAnnotationWithLength(int position, int length, String type, String identifier, Result... results)` Creates a new `LocatedSequenceAnnotationWithLength` of type `type` with identifier `identifier` and additional annotation (that does not fit the `SequenceAnnotation` definitions) given as an array of `Result`s `result`.
`LocatedSequenceAnnotationWithLength(int position, int length, String type, String identifier, SequenceAnnotation[] annotations, Result... additionalAnnotations)` Creates a new `LocatedSequenceAnnotationWithLength` of type `type` with identifier `identifier`, additional annotation (that does not fit the `SequenceAnnotation` definitions) given as an array of `Result`s `additionalAnnotations` and sub-annotations `annotations`.
`LocatedSequenceAnnotationWithLength(String type, String identifier, LocatedSequenceAnnotation[] annotations, Result... additionalAnnotations)` Creates a new `LocatedSequenceAnnotationWithLength` of type `type` with identifier `identifier`, additional annotation (that does not fit the `SequenceAnnotation` definitions) given as an array of `Result`s `additionalAnnotations` and sub-annotations `annotations`.
`MotifAnnotation(String identifier, int position, int length, StrandedLocatedSequenceAnnotationWithLength.Strand strandedness, Result... additionalAnnotation)` Creates a new `MotifAnnotation` of type `type` with identifier `identifier` and additional annotation (that does not fit the `SequenceAnnotation` definitions) given as an array of `Result`s `additionalAnnotation`.
`ReferenceSequenceAnnotation(String identifier, Sequence ref, Result... results)` Creates a new `ReferenceSequenceAnnotation` with identifier `identifier`, reference sequence `ref`, and additional annotation (that does not fit the `SequenceAnnotation` definitions) given as a `Result` `result`.
`SequenceAnnotation(String type, String identifier, Result result)` Creates a new `SequenceAnnotation` of type `type` with identifier `identifier` and additional annotation (that does not fit the `SequenceAnnotation` definitions) given as a `Result` `result`.
`SequenceAnnotation(String type, String identifier, Result[]... results)` Creates a new `SequenceAnnotation` of type `type` with identifier `identifier` and additional annotation (that does not fit the `SequenceAnnotation` definitions) given as an array of `Result`s `results`.
`SequenceAnnotation(String type, String identifier, SequenceAnnotation[] subAnnotations, Result... additionalAnnotation)` Creates a new `SequenceAnnotation` of type `type` with identifier `identifier` and additional annotation (that does not fit the `SequenceAnnotation` definitions) given as an array of `Result`s `additionalAnnotation`.
`SinglePositionSequenceAnnotation(SinglePositionSequenceAnnotation.Type type, String identifier, int position, Result... additionalAnnotation)` Creates a new `SinglePositionSequenceAnnotation` of type `type` with identifier `identifier`, position `position` and additional annotations `additionalAnnotation`.
`StrandedLocatedSequenceAnnotationWithLength(int position, int length, StrandedLocatedSequenceAnnotationWithLength.Strand strandedness, String type, String identifier, Result... results)` Creates a new `StrandedLocatedSequenceAnnotationWithLength` of type `type` with identifier `identifier` and additional annotation (that does not fit the `SequenceAnnotation` definitions) given as an array of `Result`s `results`.
`StrandedLocatedSequenceAnnotationWithLength(int position, int length, StrandedLocatedSequenceAnnotationWithLength.Strand strandedness, String type, String identifier, SequenceAnnotation[] annotations, Result... additionalAnnotations)` Creates a new `StrandedLocatedSequenceAnnotationWithLength` of type `type` with identifier `identifier`, additional annotation (that does not fit the `SequenceAnnotation` definitions) given as an array of `Result`s `additionalAnnotations` and sub-annotations `annotations`.
`StrandedLocatedSequenceAnnotationWithLength(String type, String identifier, StrandedLocatedSequenceAnnotationWithLength.Strand strandedness, LocatedSequenceAnnotation[] annotations, Result... additionalAnnotations)` Creates a new `StrandedLocatedSequenceAnnotationWithLength` of type `type` with identifier `identifier`, additional annotation (that does not fit the `SequenceAnnotation` definitions) given as an array of `Result`s `additionalAnnotations` and sub-annotations `annotations`.

Constructor parameters in de.jstacs.data.sequences.annotation with type arguments of type Result
`LocatedSequenceAnnotation(int position, String type, String identifier, Collection<Result> results)` Creates a new `LocatedSequenceAnnotation` of type `type` with identifier `identifier` and additional annotation (that does not fit the `SequenceAnnotation` definitions) given as a `Collection` of `Result`s `result`.
`LocatedSequenceAnnotationWithLength(int position, int length, String type, String identifier, Collection<Result> results)` Creates a new `LocatedSequenceAnnotationWithLength` of type `type` with identifier `identifier` and additional annotation (that does not fit the `SequenceAnnotation` definitions) given as a `Collection` of `Result`s `result`.
`SequenceAnnotation(String type, String identifier, Collection<? extends Result> results)` Creates a new `SequenceAnnotation` of type `type` with identifier `identifier` and additional annotation (that does not fit the `SequenceAnnotation` definitions) given as a `Collection` of `Result`s `results`.
`StrandedLocatedSequenceAnnotationWithLength(int position, int length, StrandedLocatedSequenceAnnotationWithLength.Strand strandedness, String type, String identifier, Collection<Result> results)` Creates a new `StrandedLocatedSequenceAnnotationWithLength` of type `type` with identifier `identifier` and additional annotation (that does not fit the `SequenceAnnotation` definitions) given as a `Collection` of `Result`s `results`.

Uses of Result in de.jstacs.results

Subclasses of Result in de.jstacs.results
`class` | `CategoricalResult` A class for categorical results (i.e. non-numerical results) for primitives and `String`s.
`class` | `ImageResult` A class for results that are images of the PNG format.
`class` | `ListResult` Class for a `Result` that contains a list or a matrix, respectively, of `ResultSet`s.
`class` | `NumericalResult` Class for numerical `Result` values.
`class` | `SampleResult` `Result` that contains a `Sample`.
`class` | `SimpleResult` Abstract class for a `Result` with a value of a primitive data type or `String`.
`class` | `StorableResult` Class for `Result`s that are `Storable`s.

Fields in de.jstacs.results declared as Result
`protected Result[]` | `ResultSet.results` The set of results as an array of `Result`s.

Methods in de.jstacs.results that return Result
`static Result` | `Result.createResult(String name, String comment, DataType datatype, Object value)` Factory method to create a new `Result`.
`Result` | `ResultSet.getResultAt(int index)` Returns `Result` number `index` in this `ResultSet`.
`Result[]` | `ResultSet.getResults()` Returns all internal results as an array of `Result`s.

Methods in de.jstacs.results with parameters of type Result
`boolean` | `Result.isCastableResult(Result test)` Returns `true` if the data type of the `Result` `test` can be casted to that of this instance and both have the same name and comment for the `Result`.
`boolean` | `Result.isComparableResult(Result test)` Returns `true` if the `Result` `test` and the current object have the same data type, name and comment for the result.

Constructors in de.jstacs.results with parameters of type Result
`ResultSet(Result result)` Constructs a new `ResultSet` containing one `Result`.
`ResultSet(Result[]... results)` Constructs a new `ResultSet` from a two-dimensional array of `Result`s.

Constructor parameters in de.jstacs.results with type arguments of type Result
`ResultSet(Collection<? extends Result> results)` Constructs a new `ResultSet` from a `Collection` of type `Result`.

Uses of Result in de.jstacs.utils.galaxy

Subclasses of Result in de.jstacs.utils.galaxy
`static class` | `GalaxyAdaptor.FileResult` `Result` for files that are results of some computation.
`static class` | `GalaxyAdaptor.LinkedImageResult` Class for an `ImageResult` that is linked to a file that can be downloaded.

Methods in de.jstacs.utils.galaxy with parameters of type Result
`void` | `GalaxyAdaptor.addResult(Result res, boolean export, boolean includeInSummary)` Adds a result to the results of a program run.
`String` | `GalaxyAdaptor.export(String filename, Result res)` Exports a specified `GalaxyAdaptor.LinkedImageResult` of a program execution to a file provided by `filename` and returns the corresponding Galaxy data type.

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