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## Uses of Class
de.jstacs.data.alphabets.DiscreteAlphabetMapping

Packages that use DiscreteAlphabetMapping
de.jstacs.data.sequences | Provides classes for representing sequences.
de.jstacs.scoringFunctions | Provides `ScoringFunction`s that can be used in a `ScoreClassifier`.

Uses of DiscreteAlphabetMapping in de.jstacs.data.sequences

Fields in de.jstacs.data.sequences declared as DiscreteAlphabetMapping
`protected DiscreteAlphabetMapping[]` | `MappedDiscreteSequence.transformation` The `DiscreteAlphabetMapping`s used for mapping the original `Sequence`.

Methods in de.jstacs.data.sequences with parameters of type DiscreteAlphabetMapping
`static AlphabetContainer` | `MappedDiscreteSequence.getNewAlphabetContainer(AlphabetContainer original, DiscreteAlphabetMapping... transformation)` This method allows to create a new `AlphabetContainer` given an old `AlphabetContainer` and some `DiscreteAlphabetMapping`s.

Constructors in de.jstacs.data.sequences with parameters of type DiscreteAlphabetMapping
`MappedDiscreteSequence(AlphabetContainer originalAlphabetContainer, SequenceAnnotation[] seqAn, DiscreteAlphabetMapping... transformation)` This method allows to create an empty `MappedDiscreteSequence`.
`MappedDiscreteSequence(SimpleDiscreteSequence original, DiscreteAlphabetMapping... transformation)` This method allows to create a `MappedDiscreteSequence` from a given `Sequence` and some given `DiscreteAlphabetMapping`s.

Uses of DiscreteAlphabetMapping in de.jstacs.scoringFunctions

Constructors in de.jstacs.scoringFunctions with parameters of type DiscreteAlphabetMapping
`MappingScoringFunction(AlphabetContainer originalAlphabetContainer, NormalizableScoringFunction nsf, DiscreteAlphabetMapping... mapping)` The main constructor creating a `MappingScoringFunction`.

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