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## Uses of Class
de.jstacs.models.hmm.transitions.elements.TransitionElement

Packages that use TransitionElement
de.jstacs.models.hmm.models | The package provides different implementations of hidden Markov models based on `AbstractHMM`
de.jstacs.models.hmm.transitions | The package provides all interfaces and classes for transitions used in hidden Markov models.
de.jstacs.models.hmm.transitions.elements |

Uses of TransitionElement in de.jstacs.models.hmm.models

Constructors in de.jstacs.models.hmm.models with parameters of type TransitionElement
`DifferentiableHigherOrderHMM(MaxHMMTrainingParameterSet trainingParameterSet, String[] name, int[] emissionIdx, boolean[] forward, DifferentiableEmission[] emission, boolean likelihood, double ess, TransitionElement... te)` This is the main constructor.
`SamplingHigherOrderHMM(SamplingHMMTrainingParameterSet trainingParameterSet, String[] name, int[] emissionIdx, boolean[] forward, SamplingEmission[] emission, TransitionElement... te)` This is the main constructor.
`SamplingPhyloHMM(SamplingHMMTrainingParameterSet trainingParameterSet, String[] name, int[] emissionIdx, boolean[] forward, PhyloDiscreteEmission[] emission, TransitionElement... te)` This is the main constructor for a hidden markov model with phylogenetic emission(s) This model can be trained using a metropolis hastings algorithm

Uses of TransitionElement in de.jstacs.models.hmm.transitions

Constructors in de.jstacs.models.hmm.transitions with parameters of type TransitionElement
`HigherOrderTransition(boolean[] isSilent, TransitionElement... transitions)` The main constructor.

Uses of TransitionElement in de.jstacs.models.hmm.transitions.elements

Methods in de.jstacs.models.hmm.transitions.elements that return TransitionElement
`TransitionElement` | `TransitionElement.clone()`

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