Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV PACKAGE NEXT PACKAGE | FRAMES NO FRAMES

## Package de.jstacs.data.sequences

Provides classes for representing sequences.

See:
Description

Class Summary
ArbitrarySequence | This class is for any continuous or hybrid sequence.
ByteSequence | This class is for sequences with the alphabet symbols encoded as `byte`s and can therefore be used for discrete `AlphabetContainer`s with alphabets that use only few symbols.
DiscreteSequence | This is the super class of discrete sequences.
IntSequence | This class is for sequences with the alphabet symbols encoded as `int`s and can therefore be used for discrete `AlphabetContainer`s with alphabets that use a huge number of symbols.
MappedDiscreteSequence | This class allows to map a discrete `Sequence` to an new `Sequence` using some `DiscreteAlphabetMapping`s.
MultiDimensionalDiscreteSequence | This class is for multidimensional sequences that can be used, for instance, for phylogenetic footprinting.
PermutedSequence<T> | This class is for permuted sequences.
ShortSequence | This class is for sequences with the alphabet symbols encoded as `shorts`s and can therefore be used for discrete `AlphabetContainer`s with alphabets that use many different symbols.
SimpleDiscreteSequence | This is the main class for any discrete sequence.
SparseSequence | This class is an implementation for sequences on one alphabet with length 4.

Exception Summary
WrongSequenceTypeException | This `Exception` indicates that the type of the sequence ( `ByteSequence`, `ShortSequence`, ...) is not suitable for a given `AlphabetContainer`.

## Package de.jstacs.data.sequences Description

Provides classes for representing sequences.
The implementations of sequences currently include `DiscreteSequence`s prepared for alphabets of different sizes, and `ArbitrarySequence`s that may contain continuous values as well.
As sub-package provides the facilities to annotate `Sequence`s.

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV PACKAGE NEXT PACKAGE | FRAMES NO FRAMES