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## W

weight - Variable in class de.jstacs.algorithms.graphs.Edge
  The weight of the edge.
weights - Variable in class de.jstacs.classifier.scoringFunctionBased.AbstractOptimizableFunction
  The weights for the data.
weights - Variable in class de.jstacs.models.mixture.AbstractMixtureModel
  The probabilities for each component.
write(Writer, StringBuffer) - Static method in class de.jstacs.io.FileManager
  This method saves a `StringBuffer` to a given `Writer`.
write(String) - Method in class de.jstacs.utils.SafeOutputStream
  Writes a `String`.
write(int) - Method in class de.jstacs.utils.SafeOutputStream
writeFile(File, StringBuffer) - Static method in class de.jstacs.io.FileManager
  This method saves a `StringBuffer` to a given `File`.
writeln() - Method in class de.jstacs.utils.SafeOutputStream
  Writes a line break.
writeln(String) - Method in class de.jstacs.utils.SafeOutputStream
  Writes a `String` and a line break.
writeOutput() - Method in class de.jstacs.utils.galaxy.GalaxyAdaptor
  Writes all output files of one program execution.
writeOutputStream(OutputStream, StringBuffer) - Static method in class de.jstacs.io.FileManager
  This method saves a `StringBuffer` to a given `OutputStream`.
writer - Variable in class de.jstacs.models.discrete.inhomogeneous.FSDAGModelForGibbsSampling
  The writer for the `paramsFile` in a sampling.
writer - Variable in class de.jstacs.models.hmm.states.emissions.discrete.AbstractConditionalDiscreteEmission
  The writer for the `paramsFile` in a sampling.
writer - Variable in class de.jstacs.models.hmm.transitions.HigherOrderTransition
  The writer for the `paramsFile` in a sampling.
writeTensorToFile(String, OutputStream) - Method in class de.jstacs.algorithms.graphs.tensor.Tensor
  This method writes a `Tensor` in the exchange format in a specified file.
WrongAlphabetException - Exception in de.jstacs
  A `WrongAlphabetException` is thrown if the given `Alphabet` or `AlphabetContainer` does not support some data.
WrongAlphabetException() - Constructor for exception de.jstacs.WrongAlphabetException
  Creates a new `WrongAlphabetException` with standard error message ("The data of the selected file does not match the entered alphabet.
WrongAlphabetException(String) - Constructor for exception de.jstacs.WrongAlphabetException
  Creates a new `WrongAlphabetException` with given error `message`.
WrongLengthException - Exception in de.jstacs.data
  A `WrongLengthException` is thrown if a given (sub)sequence length is not correct.
WrongLengthException(int) - Constructor for exception de.jstacs.data.WrongLengthException
  Simple Constructor.
WrongLengthException(String) - Constructor for exception de.jstacs.data.WrongLengthException
  Creates a new `WrongLengthException` with your own `message`.
WrongSequenceTypeException - Exception in de.jstacs.data.sequences
  This `Exception` indicates that the type of the sequence ( `ByteSequence`, `ShortSequence`, ...) is not suitable for a given `AlphabetContainer`.
WrongSequenceTypeException() - Constructor for exception de.jstacs.data.sequences.WrongSequenceTypeException
  This constructor creates a new `WrongSequenceTypeException` with default error message ("The sequence type is not suitable for this AlphabetContainer.

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