de.jstacs
de.jstacs.algorithms.alignment
de.jstacs.algorithms.alignment.cost
de.jstacs.algorithms.graphs
de.jstacs.algorithms.graphs.tensor
de.jstacs.algorithms.optimization
de.jstacs.algorithms.optimization.termination
de.jstacs.classifier
de.jstacs.classifier.assessment
de.jstacs.classifier.modelBased
de.jstacs.classifier.scoringFunctionBased
de.jstacs.classifier.scoringFunctionBased.gendismix
de.jstacs.classifier.scoringFunctionBased.logPrior
de.jstacs.classifier.scoringFunctionBased.msp
de.jstacs.classifier.scoringFunctionBased.sampling
de.jstacs.classifier.utils
de.jstacs.data
de.jstacs.data.alphabets
de.jstacs.data.bioJava
de.jstacs.data.sequences
de.jstacs.data.sequences.annotation
de.jstacs.io
de.jstacs.models
de.jstacs.models.discrete
de.jstacs.models.discrete.homogeneous
de.jstacs.models.discrete.homogeneous.parameters
de.jstacs.models.discrete.inhomogeneous
de.jstacs.models.discrete.inhomogeneous.parameters
de.jstacs.models.discrete.inhomogeneous.shared
de.jstacs.models.hmm
de.jstacs.models.hmm.models
de.jstacs.models.hmm.states
de.jstacs.models.hmm.states.emissions
de.jstacs.models.hmm.states.emissions.continuous
de.jstacs.models.hmm.states.emissions.discrete
de.jstacs.models.hmm.training
de.jstacs.models.hmm.transitions
de.jstacs.models.hmm.transitions.elements
de.jstacs.models.mixture
de.jstacs.models.mixture.motif
de.jstacs.models.mixture.motif.positionprior
de.jstacs.models.phylo
de.jstacs.models.phylo.parser
de.jstacs.models.utils
de.jstacs.motifDiscovery
de.jstacs.motifDiscovery.history
de.jstacs.parameters
de.jstacs.parameters.validation
de.jstacs.results
de.jstacs.sampling
de.jstacs.scoringFunctions
de.jstacs.scoringFunctions.directedGraphicalModels
de.jstacs.scoringFunctions.directedGraphicalModels.structureLearning.measures
de.jstacs.scoringFunctions.directedGraphicalModels.structureLearning.measures.btMeasures
de.jstacs.scoringFunctions.directedGraphicalModels.structureLearning.measures.pmmMeasures
de.jstacs.scoringFunctions.homogeneous
de.jstacs.scoringFunctions.mix
de.jstacs.scoringFunctions.mix.motifSearch
de.jstacs.utils
de.jstacs.utils.galaxy
de.jstacs.utils.random
