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## Hierarchy For Package de.jstacs.data

Package Hierarchies:
  All Packages

## Class Hierarchy

- java.lang.Object
  - de.jstacs.data.Alphabet (implements java.lang.Comparable<T>, de.jstacs.InstantiableFromParameterSet, de.jstacs.Storable)
  - de.jstacs.data.AlphabetContainer (implements java.lang.Comparable<T>, de.jstacs.InstantiableFromParameterSet, de.jstacs.Storable)
  - de.jstacs.data.DinucleotideProperty.Smoothing
    - de.jstacs.data.DinucleotideProperty.MeanSmoothing
    - de.jstacs.data.DinucleotideProperty.MedianSmoothing
    - de.jstacs.data.DinucleotideProperty.NoSmoothing
  - de.jstacs.data.DiscreteSequenceEnumerator (implements de.jstacs.data.RecyclableSequenceEnumerator)
  - de.jstacs.parameters.ParameterSet (implements java.lang.Cloneable, de.jstacs.parameters.GalaxyConvertible, de.jstacs.parameters.RangeIterator, de.jstacs.Storable)
    - de.jstacs.parameters.ExpandableParameterSet
      - de.jstacs.data.AlphabetContainerParameterSet.SectionDefinedAlphabetParameterSet
      - de.jstacs.parameters.ArrayParameterSet
        - de.jstacs.data.AlphabetContainerParameterSet.AlphabetArrayParameterSet
    - de.jstacs.parameters.InstanceParameterSet
      - de.jstacs.data.Alphabet.AlphabetParameterSet
      - de.jstacs.data.AlphabetContainerParameterSet
  - de.jstacs.data.Sample (implements java.lang.Iterable<T>)
    - de.jstacs.data.DNASample
  - de.jstacs.data.Sample.ElementEnumerator (implements java.util.Iterator<E>, de.jstacs.data.RecyclableSequenceEnumerator)
  - de.jstacs.data.Sample.WeightedSampleFactory
  - de.jstacs.data.SampleKMerEnumerator (implements de.jstacs.data.RecyclableSequenceEnumerator)
  - de.jstacs.data.Sequence<T> (implements java.lang.Comparable<T>)
    - de.jstacs.data.Sequence.RecursiveSequence<T>
      - de.jstacs.data.Sequence.CompositeSequence<T>
      - de.jstacs.data.Sequence.SubSequence<T>
  - de.jstacs.data.SequenceEnumeration (implements de.jstacs.data.RecyclableSequenceEnumerator)
  - java.lang.Throwable (implements java.io.Serializable)
    - java.lang.Exception
      - de.jstacs.data.EmptySampleException
      - de.jstacs.data.WrongLengthException

## Interface Hierarchy

- java.util.Enumeration<E>
  - de.jstacs.data.RecyclableSequenceEnumerator

## Enum Hierarchy

- java.lang.Object
  - java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    - de.jstacs.data.Sample.PartitionMethod
    - de.jstacs.data.Sample.WeightedSampleFactory.SortOperation
    - de.jstacs.data.DinucleotideProperty
    - de.jstacs.data.DinucleotideProperty.Type
    - de.jstacs.data.DinucleotideProperty.HowCreated
    - de.jstacs.data.AlphabetContainer.AlphabetContainerType

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