Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES

## Uses of Class
de.jstacs.data.sequences.annotation.LocatedSequenceAnnotationWithLength

Packages that use LocatedSequenceAnnotationWithLength
de.jstacs.data.sequences.annotation | Provides the facilities to annotate `Sequence`s using a number of pre-defined annotation types, or additional implementations of the `SequenceAnnotation` class

Uses of LocatedSequenceAnnotationWithLength in de.jstacs.data.sequences.annotation

Subclasses of LocatedSequenceAnnotationWithLength in de.jstacs.data.sequences.annotation
`class` | `IntronAnnotation` Annotation class for an intron as defined by a donor and an acceptor splice site.
`class` | `MotifAnnotation` Class for a `StrandedLocatedSequenceAnnotationWithLength` that is a motif.
`class` | `StrandedLocatedSequenceAnnotationWithLength` Class for a `SequenceAnnotation` that has a position, a length and an orientation on the strand of a `Sequence`.

Methods in de.jstacs.data.sequences.annotation with parameters of type LocatedSequenceAnnotationWithLength
`boolean` | `LocatedSequenceAnnotationWithLength.overlaps(LocatedSequenceAnnotationWithLength second)` Returns `true` if this `LocatedSequenceAnnotationWithLength` overlaps with the location of `second`.

Overview | Package | Class | Use | Tree | Deprecated | Index | Help
PREV NEXT | FRAMES NO FRAMES