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## Uses of Interface
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.SamplingEmission

Packages that use SamplingEmission
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models | The package provides different implementations of hidden Markov models based on `AbstractHMM`
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states | The package provides all interfaces and classes for states used in hidden Markov models.
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions |
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.discrete |

Uses of SamplingEmission in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models

Constructors in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models with parameters of type SamplingEmission
`SamplingHigherOrderHMM(SamplingHMMTrainingParameterSet trainingParameterSet, String[] name, int[] emissionIdx, boolean[] forward, SamplingEmission[] emission, TransitionElement... te)` This is the main constructor.

Uses of SamplingEmission in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states

Constructors in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states with parameters of type SamplingEmission
`SimpleSamplingState(SamplingEmission e, String name, boolean forward)` This constructor creates a state that can be used in a HMM that obtains its parameters from sampling.

Uses of SamplingEmission in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions

Classes in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions that implement SamplingEmission
`class` | `SilentEmission` This class implements a silent emission which is used to create silent states.

Uses of SamplingEmission in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.discrete

Classes in de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.discrete that implement SamplingEmission
`class` | `AbstractConditionalDiscreteEmission` The abstract super class of discrete emissions.
`class` | `DiscreteEmission` This class implements a simple discrete emission without any condition.
`class` | `PhyloDiscreteEmission` Phylogenetic discrete emission This class uses a phylogenetic tree to describe multidimensional data It implements Felsensteins model for nucleotide substitution (F81)
`class` | `ReferenceSequenceDiscreteEmission` This class implements a discrete emission that depends on some `ReferenceSequenceAnnotation` at a certain reference position.

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