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## Package de.jstacs.data.alphabets

Provides classes for the representation of discrete and continuous alphabets, including a `DNAAlphabet` for the most common case of DNA-sequences

See:
Description

Class Summary
Alphabet | Class for a set of symbols, i.e. an `Alphabet`.
Alphabet.AlphabetParameterSet<T extends Alphabet> | The super class for the `InstanceParameterSet` of any `Alphabet`.
ComplementableDiscreteAlphabet | This abstract class indicates that an alphabet can be used to compute the complement.
ContinuousAlphabet | Class for a continuous alphabet.
ContinuousAlphabet.ContinuousAlphabetParameterSet | Class for the `ParameterSet` of a `ContinuousAlphabet`.
DiscreteAlphabet | Class for an alphabet that consists of arbitrary `String`s.
DiscreteAlphabet.DiscreteAlphabetParameterSet | Class for the `ParameterSet` of a `DiscreteAlphabet`.
DiscreteAlphabetMapping | This class implements the transformation of discrete values to other discrete values which define a `DiscreteAlphabet`.
DNAAlphabet | This class implements the discrete alphabet that is used for DNA.
DNAAlphabet.DNAAlphabetParameterSet | The parameter set for a `DNAAlphabet`.
DNAAlphabetContainer | This class implements a singleton for an `AlphabetContainer` that can be used for DNA.
DNAAlphabetContainer.DNAAlphabetContainerParameterSet | This class implements a singleton for the `ParameterSet` of a `DNAAlphabetContainer`.
GenericComplementableDiscreteAlphabet | This class implements an generic complementable discrete alphabet.
GenericComplementableDiscreteAlphabet.GenericComplementableDiscreteAlphabetParameterSet | This class is used as container for the parameters of a `GenericComplementableDiscreteAlphabet`.
ProteinAlphabet | This class implements the discrete alphabet that is used for proteins (one letter code).
ProteinAlphabet.ProteinAlphabetParameterSet | The parameter set for a `ProteinAlphabet`.

Exception Summary
DoubleSymbolException | A `DoubleSymbolException` is thrown if a symbol occurred more than once in an alphabet.

## Package de.jstacs.data.alphabets Description

Provides classes for the representation of discrete and continuous alphabets, including a `DNAAlphabet` for the most common case of DNA-sequences.

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