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## Uses of Interface
de.jstacs.data.RecyclableSequenceEnumerator

Packages that use RecyclableSequenceEnumerator
de.jstacs.data | Provides classes for the representation of data.
de.jstacs.motifDiscovery | This package provides the framework including the interface for any de novo motif discoverer

Uses of RecyclableSequenceEnumerator in de.jstacs.data

Classes in de.jstacs.data that implement RecyclableSequenceEnumerator
`static class` | `DataSet.ElementEnumerator` This class can be used to have a fast sequential access to a `DataSet`.
`class` | `DataSetKMerEnumerator` Class for an `RecyclableSequenceEnumerator` of `Sequence`s that enumerates all k-mers that exist in a given `DataSet`, optionally ignoring reverse complements.
`class` | `DiscreteSequenceEnumerator` This class enumerates over all `Sequence`s of a specific `AlphabetContainer` and length.
`class` | `SequenceEnumeration` This class implements a `RecyclableSequenceEnumerator` on user-specified `Sequence`s.

Uses of RecyclableSequenceEnumerator in de.jstacs.motifDiscovery

Methods in de.jstacs.motifDiscovery with parameters of type RecyclableSequenceEnumerator
`static Sequence[]` | `MutableMotifDiscovererToolbox.enumerate(DifferentiableSequenceScore[] funs, int[] classIndex, int[] motifIndex, RecyclableSequenceEnumerator[] rse, double weight, DiffSSBasedOptimizableFunction opt, OutputStream out)` This method allows to enumerate all possible seeds for a number of motifs in the `MutableMotifDiscoverer`s of a specific classes.
`static Sequence` | `MutableMotifDiscovererToolbox.enumerate(DifferentiableSequenceScore[] funs, int classIndex, int motifIndex, RecyclableSequenceEnumerator rse, double weight, DiffSSBasedOptimizableFunction opt, OutputStream out)` This method allows to enumerate all possible seeds for a motif in the `MutableMotifDiscoverer` of a specific class.

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