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## Uses of Package
de.jstacs.sequenceScores

Packages that use de.jstacs.sequenceScores
de.jstacs.sequenceScores | Provides all `SequenceScore`s, which can be used to score a `Sequence`, typically using some model assumptions.
de.jstacs.sequenceScores.differentiable |
de.jstacs.sequenceScores.differentiable.logistic |
de.jstacs.sequenceScores.statisticalModels | Provides all `StatisticalModel`s, which can compute a proper (i.e., normalized) likelihood over the input space of sequences.
de.jstacs.sequenceScores.statisticalModels.differentiable | Provides all `DifferentiableStatisticalModel`s, which can compute the gradient with respect to their parameters for a given input `Sequence`.
de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels | Provides `DifferentiableStatisticalModel`s that are directed graphical models.
de.jstacs.sequenceScores.statisticalModels.differentiable.homogeneous | Provides `DifferentiableStatisticalModel`s that are homogeneous, i.e. model probabilities or scores independent of the position within a sequence
de.jstacs.sequenceScores.statisticalModels.differentiable.mixture | Provides `DifferentiableSequenceScore`s that are mixtures of other `DifferentiableSequenceScore`s.
de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif |
de.jstacs.sequenceScores.statisticalModels.trainable | Provides all `TrainableStatisticalModel`s, which can be learned from a single `DataSet`.
de.jstacs.sequenceScores.statisticalModels.trainable.discrete |
de.jstacs.sequenceScores.statisticalModels.trainable.discrete.homogeneous |
de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous | This package contains various inhomogeneous models.
de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous.shared |
de.jstacs.sequenceScores.statisticalModels.trainable.hmm | The package provides all interfaces and classes for a hidden Markov model (HMM).
de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models | The package provides different implementations of hidden Markov models based on `AbstractHMM`
de.jstacs.sequenceScores.statisticalModels.trainable.mixture | This package is the super package for any mixture model.
de.jstacs.sequenceScores.statisticalModels.trainable.mixture.motif |
de.jstacs.utils | This package contains a bundle of useful classes and interfaces like ...

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.differentiable
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.differentiable.logistic
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.differentiable
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.differentiable.homogeneous
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.differentiable.mixture
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.trainable
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.trainable.discrete
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.trainable.discrete.homogeneous
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous.shared
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.trainable.hmm
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.trainable.mixture
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.sequenceScores.statisticalModels.trainable.mixture.motif
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

Classes in de.jstacs.sequenceScores used by de.jstacs.utils
SequenceScore This interface defines a scoring function that assigns a score to each input sequence.

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