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## de.jstacs.sequenceScores.statisticalModels.trainable.hmm.training
Class MaxHMMTrainingParameterSet

    java.lang.Object
      de.jstacs.parameters.ParameterSet
          de.jstacs.sequenceScores.statisticalModels.trainable.hmm.training.HMMTrainingParameterSet
              de.jstacs.sequenceScores.statisticalModels.trainable.hmm.training.MaxHMMTrainingParameterSet

All Implemented Interfaces:
  GalaxyConvertible, Storable, Cloneable

Direct Known Subclasses:
  MultiThreadedTrainingParameterSet

    public abstract class MaxHMMTrainingParameterSet

extends HMMTrainingParameterSet

This class is the super class for any `HMMTrainingParameterSet` that is used for a maximizing training algorithm of a hidden Markov model.

Author:
  Jens Keilwagen

Nested Class Summary

Nested classes/interfaces inherited from class de.jstacs.parameters.ParameterSet
`ParameterSet.ParameterList`

Field Summary

Fields inherited from class de.jstacs.parameters.ParameterSet
`errorMessage, parameters, parent`

Constructor Summary
`protected` | `MaxHMMTrainingParameterSet()` This is the empty constructor that can be used to fill the parameters after creation.
`protected` | `MaxHMMTrainingParameterSet(int starts, AbstractTerminationCondition tc)` This constructor can be used to create an instance with specified parameters.
`protected` | `MaxHMMTrainingParameterSet(StringBuffer xml)` The standard constructor for the interface `Storable`.

Method Summary
`AbstractTerminationCondition` | `getTerminationCondition()` This method returns the `AbstractTerminationCondition` for stopping the training, e.g., if the difference of the scores between two iterations is smaller than a given threshold the training is stopped.

Methods inherited from class de.jstacs.sequenceScores.statisticalModels.trainable.hmm.training.HMMTrainingParameterSet
`getNumberOfStarts`

Methods inherited from class de.jstacs.parameters.ParameterSet
`clone, fromGalaxy, fromXML, getAllParameterNames, getComment, getComment, getErrorMessage, getIndex, getName, getName, getNumberOfParameters, getParameterAt, getParameterForName, getParent, hasDefaultOrIsSet, initParameterList, initParameterList, isAtomic, isComparable, parametersLoaded, reset, setParent, toGalaxy, toXML`

Methods inherited from class java.lang.Object
`equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

Constructor Detail

### MaxHMMTrainingParameterSet

    protected MaxHMMTrainingParameterSet()

  This is the empty constructor that can be used to fill the parameters after creation.

### MaxHMMTrainingParameterSet

    protected MaxHMMTrainingParameterSet(int starts,
                                         AbstractTerminationCondition tc)
                                  throws Exception

  This constructor can be used to create an instance with specified parameters.

  Parameters:
    `starts` - the number of different starts
    `tc` - the termination condition for stopping the algorithm
  Throws:
    `Exception` - if this `MaxHMMTrainingParameterSet` could not be created

### MaxHMMTrainingParameterSet

    protected MaxHMMTrainingParameterSet(StringBuffer xml)
                                  throws NonParsableException

  The standard constructor for the interface `Storable`. Constructs a `MaxHMMTrainingParameterSet` out of an XML representation.

  Parameters:
    `xml` - the XML representation as `StringBuffer`
  Throws:
    `NonParsableException` - if the `MaxHMMTrainingParameterSet` could not be reconstructed out of the `StringBuffer` `xml`

Method Detail

### getTerminationCondition

    public AbstractTerminationCondition getTerminationCondition()
                                                         throws ParameterSetParser.NotInstantiableException

  This method returns the `AbstractTerminationCondition` for stopping the training, e.g., if the difference of the scores between two iterations is smaller than a given threshold the training is stopped.

  Returns:
    the `AbstractTerminationCondition` for stopping the training
  Throws:
    `ParameterSetParser.NotInstantiableException` - if the `AbstractTerminationCondition` could not be created from its `ParameterSet`

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