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## de.jstacs.sequenceScores.statisticalModels.trainable.hmm.training
Class HMMTrainingParameterSet

    java.lang.Object
      de.jstacs.parameters.ParameterSet
          de.jstacs.sequenceScores.statisticalModels.trainable.hmm.training.HMMTrainingParameterSet

All Implemented Interfaces:
  GalaxyConvertible, Storable, Cloneable

Direct Known Subclasses:
  MaxHMMTrainingParameterSet, SamplingHMMTrainingParameterSet

    public abstract class HMMTrainingParameterSet

extends ParameterSet

This class implements an abstract `ParameterSet` that is used for the training of an `AbstractHMM`.

Author:
  Jens Keilwagen

Nested Class Summary

Nested classes/interfaces inherited from class de.jstacs.parameters.ParameterSet
`ParameterSet.ParameterList`

Field Summary

Fields inherited from class de.jstacs.parameters.ParameterSet
`errorMessage, parameters, parent`

Constructor Summary
`protected` | `HMMTrainingParameterSet()` This is the empty constructor that can be used to fill the parameters after creation.
`protected` | `HMMTrainingParameterSet(int starts)` This constructor can be used to create an instance with a specified number of starts.
`protected` | `HMMTrainingParameterSet(StringBuffer xml)` The standard constructor for the interface `Storable`.

Method Summary
`int` | `getNumberOfStarts()` The method returns the number of different starts.

Methods inherited from class de.jstacs.parameters.ParameterSet
`clone, fromGalaxy, fromXML, getAllParameterNames, getComment, getComment, getErrorMessage, getIndex, getName, getName, getNumberOfParameters, getParameterAt, getParameterForName, getParent, hasDefaultOrIsSet, initParameterList, initParameterList, isAtomic, isComparable, parametersLoaded, reset, setParent, toGalaxy, toXML`

Methods inherited from class java.lang.Object
`equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait`

Constructor Detail

### HMMTrainingParameterSet

    protected HMMTrainingParameterSet()

  This is the empty constructor that can be used to fill the parameters after creation.

### HMMTrainingParameterSet

    protected HMMTrainingParameterSet(int starts)
                               throws SimpleParameter.IllegalValueException

  This constructor can be used to create an instance with a specified number of starts.

  Parameters:
    `starts` - the number of different starts
  Throws:
    `SimpleParameter.IllegalValueException` - if the parameter can not be set

### HMMTrainingParameterSet

    protected HMMTrainingParameterSet(StringBuffer xml)
                               throws NonParsableException

  The standard constructor for the interface `Storable`. Constructs a `HMMTrainingParameterSet` out of an XML representation.

  Parameters:
    `xml` - the XML representation as `StringBuffer`
  Throws:
    `NonParsableException` - if the `HMMTrainingParameterSet` could not be reconstructed out of the `StringBuffer` `xml`

Method Detail

### getNumberOfStarts

    public int getNumberOfStarts()

  The method returns the number of different starts.

  Returns:
    the number of starts

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