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## J

joinAndSetParameterFiles(boolean, File[]) - Method in class de.jstacs.classifiers.differentiableSequenceScoreBased.sampling.SamplingScoreBasedClassifier.DiffSMSamplingComponent
  Combines parameter files such that they are accepted as parameter files of the calling `SamplingScoreBasedClassifier`
joinAndSetParameterFiles(boolean, File...) - Method in class de.jstacs.classifiers.differentiableSequenceScoreBased.sampling.SamplingScoreBasedClassifier
  Combines parameter files such that they are accepted as parameter files of this `SamplingScoreBasedClassifier`
joinFunction() - Method in class de.jstacs.classifiers.differentiableSequenceScoreBased.AbstractMultiThreadedOptimizableFunction
  This method joins the partial results that have been computed using `AbstractMultiThreadedOptimizableFunction.evaluateFunction(int, int, int, int, int)`.
joinFunction() - Method in class de.jstacs.classifiers.differentiableSequenceScoreBased.gendismix.LogGenDisMixFunction
joinGradients() - Method in class de.jstacs.classifiers.differentiableSequenceScoreBased.AbstractMultiThreadedOptimizableFunction
  This method joins the gradients of each part that have been computed using `AbstractMultiThreadedOptimizableFunction.evaluateGradientOfFunction(int, int, int, int, int)`.
joinGradients() - Method in class de.jstacs.classifiers.differentiableSequenceScoreBased.gendismix.LogGenDisMixFunction
joinProfiles(double[][]) - Method in interface de.jstacs.motifDiscovery.SignificantMotifOccurrencesFinder.JoinMethod
  Joins the profiles in `profiles` into a common profile, where each line of `profiles` corresponds to one profile to be joined
joinProfiles(double[][]) - Method in class de.jstacs.motifDiscovery.SignificantMotifOccurrencesFinder.SumOfProbabilities
joinStatistics(Emission...) - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.continuous.GaussianEmission
joinStatistics(Emission...) - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.discrete.AbstractConditionalDiscreteEmission
joinStatistics(Emission...) - Method in interface de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.Emission
  This method joins the statistics of different instances and sets this joined statistic as statistic of each instance.
joinStatistics(Emission...) - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.MixtureEmission
joinStatistics(Emission...) - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.SilentEmission
joinStatistics(Emission...) - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.UniformEmission
joinStatistics(BasicHigherOrderTransition.AbstractTransitionElement...) - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.hmm.transitions.BasicHigherOrderTransition.AbstractTransitionElement
  This method joins the statistics of different instances and sets this joined statistic as statistic of each instance.
joinStatistics(Transition...) - Method in class de.jstacs.sequenceScores.statisticalModels.trainable.hmm.transitions.BasicHigherOrderTransition
joinStatistics(Transition...) - Method in interface de.jstacs.sequenceScores.statisticalModels.trainable.hmm.transitions.TransitionWithSufficientStatistic
  This method joins the statistics of different instances and sets this joined statistic as statistic of each instance.

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