User contributions for Grau

16:4116:41, 12 February 2016 diff hist +552‎ Downloads ‎No edit summary

21:4221:42, 11 February 2016 diff hist −1,097‎ GeMoMa ‎ →‎Running the command line application

17:2317:23, 9 February 2016 diff hist −265‎ Main Page ‎No edit summary
17:2117:21, 9 February 2016 diff hist −1‎ Main Page ‎ →‎Latest Papers
17:2117:21, 9 February 2016 diff hist +1‎ Main Page ‎ →‎Current release
17:2017:20, 9 February 2016 diff hist +1‎ MediaWiki:Sidebar ‎No edit summary
17:2017:20, 9 February 2016 diff hist +29‎ N Recent changes ‎ moved Recent changes to Version history current
17:2017:20, 9 February 2016 diff hist 0‎ m Version history ‎ moved Recent changes to Version history
17:1917:19, 9 February 2016 diff hist −65‎ MediaWiki:Sidebar ‎No edit summary
17:0117:01, 9 February 2016 diff hist +581‎ GeMoMa ‎No edit summary

13:1913:19, 2 February 2016 diff hist +16‎ AnnoTALE ‎ →‎Version history
13:1813:18, 2 February 2016 diff hist −3‎ AnnoTALE ‎ →‎Version history

14:4314:43, 1 February 2016 diff hist +4‎ m GeMoMa ‎ →‎Running the command line application

16:5416:54, 29 January 2016 diff hist +232‎ Projects ‎No edit summary
16:4316:43, 29 January 2016 diff hist +15‎ Main Page ‎ →‎Applications
16:2216:22, 29 January 2016 diff hist +347‎ AnnoTALE ‎No edit summary
16:1716:17, 29 January 2016 diff hist +11‎ AnnoTALE ‎No edit summary
16:1516:15, 29 January 2016 diff hist +1,264‎ AnnoTALE ‎ →‎Download
16:0616:06, 29 January 2016 diff hist +138‎ AnnoTALE ‎ →‎AnnoTALE command line application
16:0416:04, 29 January 2016 diff hist 0‎ AnnoTALE ‎ →‎Standard pipeline

18:1718:17, 22 December 2015 diff hist +1,008‎ GeMoMa ‎ →‎Running the command line application

15:2515:25, 18 November 2015 diff hist +218‎ AnnoTALE ‎ →‎Download

13:2713:27, 21 October 2015 diff hist +3‎ AnnoTALE ‎ →‎Download
13:2713:27, 21 October 2015 diff hist +2‎ AnnoTALE ‎No edit summary
13:2413:24, 21 October 2015 diff hist −2‎ AnnoTALE ‎No edit summary
13:2413:24, 21 October 2015 diff hist −33‎ AnnoTALE ‎No edit summary
13:2313:23, 21 October 2015 diff hist +4,304‎ AnnoTALE ‎ →‎AnnoTALE command line application
12:4812:48, 21 October 2015 diff hist +9‎ AnnoTALE ‎ →‎User Guide
12:4712:47, 21 October 2015 diff hist +1‎ m AnnoTALE ‎ →‎User Guide
12:4612:46, 21 October 2015 diff hist +206‎ AnnoTALE ‎No edit summary

14:3514:35, 19 October 2015 diff hist +36‎ AnnoTALE ‎No edit summary
14:3214:32, 19 October 2015 diff hist 0‎ N File:AnnoTALE.png ‎No edit summary current
14:3014:30, 19 October 2015 diff hist +12‎ AnnoTALE ‎ →‎AnnoTALE command line application
14:2914:29, 19 October 2015 diff hist +4‎ AnnoTALE ‎ →‎Download

12:2512:25, 16 October 2015 diff hist +49‎ GeMoMa ‎ →‎Download

18:2218:22, 5 July 2015 diff hist +1‎ Projects ‎No edit summary
18:2218:22, 5 July 2015 diff hist +81‎ Projects ‎No edit summary

18:0418:04, 2 July 2015 diff hist +19‎ Main Page ‎ →‎Latest Papers
16:5816:58, 2 July 2015 diff hist −5‎ Slim ‎ →‎Paper current
16:5816:58, 2 July 2015 diff hist +70‎ Slim ‎ →‎Paper
16:5716:57, 2 July 2015 diff hist +50‎ Slim ‎ →‎Manuscript
16:5616:56, 2 July 2015 diff hist +205‎ Main Page ‎ →‎Latest Papers
14:1714:17, 2 July 2015 diff hist +45‎ DBcorrDB ‎No edit summary current

17:1717:17, 30 June 2015 diff hist 0‎ AnnoTALE ‎ →‎Download
17:1717:17, 30 June 2015 diff hist +181‎ AnnoTALE ‎ →‎Download

22:3522:35, 28 June 2015 diff hist +780‎ N DBcorrDB ‎ Created page with "by Jan Grau, Ivo Grosse, Stefan Posch, and Jens Keilwagen [http://galaxy.informatik.uni-halle.de DBcorrDB] provides a data base of 1541 motifs discovered from 757 ENCODE data se..."

18:4618:46, 19 June 2015 diff hist 0‎ File:AnnoTALEscreenshot.jpg ‎ uploaded a new version of "File:AnnoTALEscreenshot.jpg" current
18:4018:40, 19 June 2015 diff hist 0‎ AnnoTALE ‎ →‎Download
18:3918:39, 19 June 2015 diff hist +66‎ AnnoTALE ‎ →‎Download
17:2317:23, 19 June 2015 diff hist +33‎ AnnoTALE ‎No edit summary
17:2317:23, 19 June 2015 diff hist 0‎ N File:AnnoTALEscreenshot.jpg ‎No edit summary
17:1817:18, 19 June 2015 diff hist +204‎ AnnoTALE ‎No edit summary
17:1617:16, 19 June 2015 diff hist +199‎ AnnoTALE ‎No edit summary
17:1417:14, 19 June 2015 diff hist +260‎ AnnoTALE ‎No edit summary
17:1017:10, 19 June 2015 diff hist +1,651‎ N AnnoTALE ‎ Created page with "Transcription activator-like effectors (TALEs) are virulence factors of plant-pathogenic Xanthomonas spp. that function as gene activators inside plant host cells. AnnoTALE is a..."

01:2601:26, 23 December 2014 diff hist −1‎ m Slim ‎ →‎Download
01:2501:25, 23 December 2014 diff hist +3‎ m Slim ‎ →‎Download
01:2401:24, 23 December 2014 diff hist +4‎ m Slim ‎No edit summary
01:2401:24, 23 December 2014 diff hist +821‎ Slim ‎No edit summary

14:4414:44, 19 December 2014 diff hist +1‎ N PMMdeNovo ‎ Created page with "="

23:4123:41, 13 October 2014 diff hist 0‎ Imprint ‎No edit summary current

19:3919:39, 22 March 2014 diff hist +76‎ Projects ‎No edit summary
19:3819:38, 22 March 2014 diff hist +13‎ Main Page ‎ →‎Latest Papers

14:2214:22, 7 March 2014 diff hist +13‎ m Dimont ‎ →‎Dimont @ Chipster
14:2114:21, 7 March 2014 diff hist +115‎ Dimont ‎No edit summary

11:4311:43, 20 November 2013 diff hist +56‎ Dimont ‎ →‎Dimont @ Galaxy toolshed
11:4111:41, 20 November 2013 diff hist +364‎ Dimont ‎No edit summary
11:2511:25, 20 November 2013 diff hist +13‎ Dimont ‎ →‎Paper
11:2411:24, 20 November 2013 diff hist +2‎ Main Page ‎ →‎Latest Papers

16:1516:15, 21 September 2013 diff hist +68‎ Dimont ‎ →‎Paper
16:1516:15, 21 September 2013 diff hist +14‎ Dimont ‎ →‎Paper
16:1416:14, 21 September 2013 diff hist +53‎ Main Page ‎ →‎Latest Papers

15:4715:47, 17 September 2013 diff hist +3‎ N PMM ‎ Created page with "PMM" current

15:0315:03, 1 September 2013 diff hist −4‎ m Main Page ‎ →‎Latest Papers
15:0315:03, 1 September 2013 diff hist +405‎ Main Page ‎ →‎Latest Papers
15:0115:01, 1 September 2013 diff hist +30‎ Main Page ‎No edit summary
14:0314:03, 1 September 2013 diff hist +227‎ Dimont ‎No edit summary
14:0114:01, 1 September 2013 diff hist +35‎ TALENoffer ‎No edit summary current
14:0014:00, 1 September 2013 diff hist +6‎ TALgetter ‎No edit summary
13:5913:59, 1 September 2013 diff hist +251‎ TALENoffer ‎No edit summary
13:5613:56, 1 September 2013 diff hist +158‎ Projects ‎No edit summary
13:4813:48, 1 September 2013 diff hist −212‎ TALgetter ‎No edit summary

15:3015:30, 17 August 2013 diff hist +9‎ Main Page ‎ →‎Bug reports & Feature requests

22:3622:36, 26 July 2013 diff hist +236‎ TALENoffer ‎ →‎Running the command line application
21:0721:07, 26 July 2013 diff hist +1,086‎ TALENoffer ‎No edit summary

22:4622:46, 17 July 2013 diff hist +11‎ CRISPRer ‎ →‎Running the command line application current
22:4622:46, 17 July 2013 diff hist +5,284‎ N CRISPRer ‎ Created page with "by Jan Grau, Jens Boch, and Stefan Posch. CRISPRer is a tool for genome-wide selection and assessment of CRISPR/Cas protospacers. CRISPRer offers three distinct tasks. First, CR..."

16:2616:26, 8 July 2013 diff hist +280‎ Dimont ‎No edit summary
16:2316:23, 8 July 2013 diff hist +1,806‎ Dimont ‎No edit summary

23:1623:16, 6 July 2013 diff hist +16‎ Main Page ‎ →‎Applications

17:1117:11, 31 May 2013 diff hist +3,199‎ Version history ‎No edit summary
16:5416:54, 31 May 2013 diff hist 0‎ Main Page ‎ →‎Current release
16:4716:47, 31 May 2013 diff hist 0‎ Cookbook ‎No edit summary current
16:4516:45, 31 May 2013 diff hist +16‎ m Downloads ‎ →‎All versions
16:4416:44, 31 May 2013 diff hist +699‎ Downloads ‎ →‎All versions
16:4016:40, 31 May 2013 diff hist 0‎ Downloads ‎ →‎Current release (v2.0)

21:4021:40, 29 May 2013 diff hist +10‎ TALENoffer ‎No edit summary
21:3921:39, 29 May 2013 diff hist +6,080‎ N TALENoffer ‎ Created page with "by Jan Grau, Jens Boch, and Stefan Posch. TALENoffer is a tool for genome-wide prediction of TAL effector nuclease (TALEN) off-target sites. TALENoffer is based on the same stat..."
21:2121:21, 29 May 2013 diff hist +26‎ m TALgetter ‎No edit summary

13:4413:44, 14 May 2013 diff hist +845‎ Dimont ‎No edit summary

21:5521:55, 22 April 2013 diff hist +1,305‎ N AUC-PR ‎ Created page with "== Area under ROC and PR curves for weighted and unweighted data == by Jens Keilwagen, Ivo Grosse, and Jan Grau Precision-recall and ROC curves are highly informative about the ..." current

13:3813:38, 26 March 2013 diff hist +16‎ Main Page ‎ →‎Latest Papers
13:3813:38, 26 March 2013 diff hist +242‎ Main Page ‎No edit summary
13:3613:36, 26 March 2013 diff hist +2‎ TALgetter ‎ →‎Paper
13:3513:35, 26 March 2013 diff hist 0‎ TALgetter ‎ →‎Paper
13:3513:35, 26 March 2013 diff hist +319‎ TALgetter ‎No edit summary

17:4217:42, 18 March 2013 diff hist +389‎ TALgetter ‎No edit summary

14:0614:06, 13 March 2013 diff hist −32‎ m Dimont ‎ ChIPper -> Dimont

16:0116:01, 10 February 2013 diff hist +57‎ Projects ‎No edit summary

19:3719:37, 7 January 2013 diff hist +982‎ Dimont ‎No edit summary

13:5213:52, 5 January 2013 diff hist +821‎ Dimont ‎No edit summary
13:3313:33, 5 January 2013 diff hist +194‎ Dimont ‎No edit summary
13:2913:29, 5 January 2013 diff hist +2,748‎ Dimont ‎No edit summary
13:2313:23, 5 January 2013 diff hist +2,873‎ Dimont ‎No edit summary
13:1613:16, 5 January 2013 diff hist +844‎ Dimont ‎No edit summary
13:1513:15, 5 January 2013 diff hist +1,123‎ N Dimont ‎ Created page with "by Jan Grau, Stefan Posch, Ivo Grosse, and Jens Keilwagen ChIPper is a universal tool for de-novo motif discovery. ChIPper has successfully been applied to ChIP-seq, ChIP-exo an..."

21:3221:32, 11 December 2012 diff hist +324‎ TALgetter ‎ →‎Download

14:0014:00, 28 August 2012 diff hist +498‎ TALgetter ‎No edit summary

00:3000:30, 27 August 2012 diff hist +99‎ TALgetter ‎No edit summary

10:5610:56, 16 August 2012 diff hist +607‎ TALgetter ‎No edit summary

22:0622:06, 15 August 2012 diff hist +30‎ TALgetter ‎ →‎Download
22:0522:05, 15 August 2012 diff hist +811‎ TALgetter ‎ →‎Installing the web-application
21:5721:57, 15 August 2012 diff hist −1‎ TALgetter ‎ →‎Running the command line application
21:5521:55, 15 August 2012 diff hist +469‎ TALgetter ‎ →‎Running the command line application
21:5121:51, 15 August 2012 diff hist +1‎ TALgetter ‎ →‎Running the command line application
21:5121:51, 15 August 2012 diff hist +1‎ TALgetter ‎ →‎Running the command line application
21:5021:50, 15 August 2012 diff hist +2,612‎ TALgetter ‎No edit summary
21:4021:40, 15 August 2012 diff hist +1,335‎ N TALgetter ‎ Created page with "TALgetter allows you to scan input sequences for putative target sites of a given TAL (transcription activator like) effector as typically expressed by many ''Xanthomonas'' bacte..."

13:4013:40, 14 July 2012 diff hist +519‎ Main Page ‎No edit summary

11:1711:17, 20 May 2012 diff hist +64‎ Main Page ‎ →‎Current release

15:1415:14, 15 May 2012 diff hist +130‎ Cookbook ‎No edit summary
15:1315:13, 15 May 2012 diff hist +63‎ MediaWiki:Sidebar ‎No edit summary
15:0715:07, 15 May 2012 diff hist +103‎ Main Page ‎ →‎Getting started & Cookbook

16:3716:37, 14 May 2012 diff hist 0‎ File:Classes.png ‎ uploaded a new version of "File:Classes.png" current

16:2616:26, 27 April 2012 diff hist +1‎ m FlowCap ‎ →‎Instructions
16:2516:25, 27 April 2012 diff hist +743‎ FlowCap ‎ →‎Instructions

11:4411:44, 25 April 2012 diff hist +973‎ FlowCap ‎No edit summary
11:3811:38, 25 April 2012 diff hist +320‎ FlowCap ‎ →‎Download
11:3111:31, 25 April 2012 diff hist +21‎ N FlowCap/ ‎ Redirected page to FlowCap current

11:4411:44, 24 April 2012 diff hist +3‎ FlowCap ‎ →‎Method description
11:1011:10, 24 April 2012 diff hist +4,146‎ N FlowCap ‎ Created page with "This page contains supplemental information to our submission to Dream6 challenge 4 "Classification of AML". For information about this challenge, please visit [http://www.the-dr..."

09:4909:49, 14 February 2012 diff hist +123‎ Dispom ‎ →‎Download

09:5309:53, 7 February 2012 diff hist −395‎ Main Page ‎ →‎Workshop

20:1620:16, 6 February 2012 diff hist −1‎ Getting started ‎ →‎Additional Requirements
20:1620:16, 6 February 2012 diff hist +453‎ Getting started ‎ →‎Additional Requirements
20:1120:11, 6 February 2012 diff hist −82‎ Getting started ‎ →‎Basic Requirements
20:1120:11, 6 February 2012 diff hist +87‎ m Getting started ‎ →‎Basic Requirements
20:0920:09, 6 February 2012 diff hist +155‎ Main Page ‎ →‎Cookbook
20:0320:03, 6 February 2012 diff hist −3‎ m Getting started ‎ →‎First steps
20:0220:02, 6 February 2012 diff hist +78‎ Getting started ‎ →‎Additional Requirements
20:0120:01, 6 February 2012 diff hist +744‎ Getting started ‎No edit summary
19:5619:56, 6 February 2012 diff hist +431‎ Main Page ‎No edit summary

10:4410:44, 3 February 2012 diff hist +9‎ m Second main course: Classifiers ‎No edit summary current
10:4310:43, 3 February 2012 diff hist +9‎ m First main course: SequenceScores ‎No edit summary
10:4210:42, 3 February 2012 diff hist +9‎ m Intermediate course: XMLParser, Parameters, and Results ‎No edit summary current
10:4110:41, 3 February 2012 diff hist +9‎ m Starter: Data handling ‎No edit summary current

17:0417:04, 2 February 2012 diff hist +458‎ FAQs ‎No edit summary current
17:0017:00, 2 February 2012 diff hist −18‎ FAQs ‎ →‎Using existing models
16:5616:56, 2 February 2012 diff hist +90‎ FAQs ‎ →‎Using existing models
16:5516:55, 2 February 2012 diff hist +116‎ FAQs ‎ →‎Using existing models
16:5216:52, 2 February 2012 diff hist +53‎ FAQs ‎ →‎Using existing models
16:5116:51, 2 February 2012 diff hist +1‎ FAQs ‎ →‎Using existing models
16:5016:50, 2 February 2012 diff hist +93‎ FAQs ‎ →‎Using existing models
16:4816:48, 2 February 2012 diff hist +8‎ FAQs ‎No edit summary
16:4616:46, 2 February 2012 diff hist +1‎ FAQs ‎ →‎Handling data
16:4616:46, 2 February 2012 diff hist +23‎ FAQs ‎No edit summary
16:2816:28, 2 February 2012 diff hist −595‎ Recipes ‎No edit summary
16:2616:26, 2 February 2012 diff hist −30‎ Dessert: Alignments, Utils, and goodies ‎No edit summary current
16:2616:26, 2 February 2012 diff hist −36‎ Second main course: Classifiers ‎No edit summary
16:2516:25, 2 February 2012 diff hist −38‎ First main course: SequenceScores ‎No edit summary
16:2516:25, 2 February 2012 diff hist −60‎ Intermediate course: XMLParser, Parameters, and Results ‎No edit summary
16:2516:25, 2 February 2012 diff hist −27‎ Starter: Data handling ‎No edit summary
16:2416:24, 2 February 2012 diff hist −38‎ Intermediate course: Optimization ‎No edit summary current
16:2416:24, 2 February 2012 diff hist −3‎ Intermediate course: Optimization ‎No edit summary
16:2316:23, 2 February 2012 diff hist −1‎ Second main course: Classifiers ‎No edit summary
16:2316:23, 2 February 2012 diff hist −4‎ Second main course: Classifiers ‎ →‎Second main course: Classifiers
16:2216:22, 2 February 2012 diff hist −19‎ Second main course: Classifiers ‎No edit summary
16:2116:21, 2 February 2012 diff hist −39‎ Second main course: Classifiers ‎No edit summary
16:1916:19, 2 February 2012 diff hist −6‎ First main course: SequenceScores ‎No edit summary
16:1916:19, 2 February 2012 diff hist +35‎ First main course: SequenceScores ‎No edit summary
16:0016:00, 2 February 2012 diff hist −711‎ Intermediate course: XMLParser, Parameters, and Results ‎No edit summary
15:5915:59, 2 February 2012 diff hist +105‎ Cookbook ‎No edit summary
15:5815:58, 2 February 2012 diff hist +170‎ Starter: Data handling ‎No edit summary
15:5515:55, 2 February 2012 diff hist +4,386‎ Version history ‎No edit summary
15:4915:49, 2 February 2012 diff hist +447‎ Downloads ‎No edit summary
15:4415:44, 2 February 2012 diff hist +3‎ MediaWiki:Sidebar ‎No edit summary
15:4315:43, 2 February 2012 diff hist +71‎ MediaWiki:Sidebar ‎No edit summary
15:0815:08, 2 February 2012 diff hist −92‎ Cookbook ‎No edit summary
14:5714:57, 2 February 2012 diff hist 0‎ N File:Classes.png ‎No edit summary
01:0601:06, 2 February 2012 diff hist +30,235‎ N Recipes ‎ Created page with "In this section, we show some more complex code examples. All these code examples can be downloaded at XXXX and may serve as a starting points for your own..."
01:0501:05, 2 February 2012 diff hist 0‎ Cookbook ‎No edit summary
01:0401:04, 2 February 2012 diff hist +270‎ Cookbook ‎No edit summary
01:0201:02, 2 February 2012 diff hist +273‎ Cookbook ‎ →‎About this cookbook
00:5700:57, 2 February 2012 diff hist +36‎ N Cookbook – Starter: Data handling ‎ moved Cookbook – Starter: Data handling to Starter: Data handling current
00:5700:57, 2 February 2012 diff hist 0‎ m Starter: Data handling ‎ moved Cookbook – Starter: Data handling to Starter: Data handling
00:5700:57, 2 February 2012 diff hist +10,466‎ N Dessert: Alignments, Utils, and goodies ‎ Created page with " In this section, we present a motley composition of interesting classes of Jstacs. == Alignments == In this subsection, we present how to compute Alignments using Jstacs. I..."
00:5600:56, 2 February 2012 diff hist +5,751‎ N Intermediate course: Optimization ‎ Created page with " For many tasks in Jstacs, especially for numerical parameter learning, we need numerical optimization techniques. We start the description of..."
00:5500:55, 2 February 2012 diff hist +17,868‎ N Second main course: Classifiers ‎ Created page with "= Second main course: Classifiers = Classifiers allow to classify, i.e., label, previously uncharacterized data. In Jstacs, we provide the abstrac..."
00:5300:53, 2 February 2012 diff hist −5‎ First main course: SequenceScores ‎No edit summary
00:5200:52, 2 February 2012 diff hist +52,158‎ N First main course: SequenceScores ‎ Created page with " [http://www.jstacs.de/api-2.0//de/jstacs/sequenceScores/SequenceScore.html SequenceScore] s define scoring functions over sequences that can as..."
00:5100:51, 2 February 2012 diff hist +24,042‎ N Intermediate course: XMLParser, Parameters, and Results ‎ Created page with " In the early days of Jstacs, we stored models, classifiers, and other Jstacs objects using the standard serialization of Java. However, this me..."
00:4900:49, 2 February 2012 diff hist +31,489‎ N Starter: Data handling ‎ Created page with " In Jstacs, data is organized at three levels: * [http://www.jstacs.de/api-2.0//de/jstacs/data/alphabets/Alphabet.html Alphabet] s for defining single s..."
00:4600:46, 2 February 2012 diff hist +6,632‎ N Cookbook ‎ Created page with "== General structure of Jstacs == A coarse view on the structure of Jstacs is presented in Figure #fig:classes (link). Being a library for statistical analysis and classific..."

22:4522:45, 31 January 2012 diff hist +23‎ N Test ‎ Created page with "<math>\partial x</math>" current

21:2521:25, 23 August 2011 diff hist −7‎ Main Page ‎No edit summary

10:4210:42, 23 July 2011 diff hist +18‎ Acknowledgements ‎ →‎Contributors

15:3515:35, 1 June 2011 diff hist +4‎ Main Page ‎No edit summary
15:3415:34, 1 June 2011 diff hist +77‎ Main Page ‎No edit summary
15:3315:33, 1 June 2011 diff hist +1‎ m Main Page ‎No edit summary
15:3315:33, 1 June 2011 diff hist +95‎ m Main Page ‎No edit summary
15:2815:28, 1 June 2011 diff hist 0‎ Main Page ‎ →‎Current release
15:2715:27, 1 June 2011 diff hist +443‎ Downloads ‎No edit summary
15:2215:22, 1 June 2011 diff hist +2,175‎ Version history ‎No edit summary

13:4113:41, 31 May 2011 diff hist +328‎ Workshop ‎No edit summary current

12:2212:22, 26 May 2011 diff hist +6‎ m Dispom ‎No edit summary
12:2112:21, 26 May 2011 diff hist +2,090‎ Dispom ‎No edit summary
12:1812:18, 26 May 2011 diff hist +6‎ m Dispom ‎ →‎Download
12:1712:17, 26 May 2011 diff hist +389‎ Dispom ‎ →‎Download

07:2207:22, 17 May 2011 diff hist +1,680‎ Dispom ‎No edit summary
07:1107:11, 17 May 2011 diff hist +801‎ Workshop ‎No edit summary

18:4018:40, 11 May 2011 diff hist +1,190‎ m Training a classifier and classifying new sequences ‎ Reverted edits by 173.244.206.128 (talk) to last revision by Keilwagen current
18:3618:36, 11 May 2011 diff hist +8,208‎ Dispom ‎ Undo revision 390 by 88.191.118.7 (talk)
18:3618:36, 11 May 2011 diff hist +17‎ Dispom ‎ Undo revision 391 by 195.184.101.131 (talk)
18:3518:35, 11 May 2011 diff hist −11‎ Dispom ‎ Undo revision 395 by 202.64.130.26 (talk)
18:3518:35, 11 May 2011 diff hist +10‎ Dispom ‎ Undo revision 398 by 62.165.156.2 (talk)
18:3518:35, 11 May 2011 diff hist −10‎ Dispom ‎ Undo revision 400 by 94.23.249.145 (talk)
18:3518:35, 11 May 2011 diff hist −22‎ Dispom ‎ Undo revision 401 by 200.68.9.226 (talk)
18:3418:34, 11 May 2011 diff hist +43‎ Dispom ‎ Undo revision 402 by 202.171.253.70 (talk)
18:3418:34, 11 May 2011 diff hist −22‎ Dispom ‎ Undo revision 412 by 134.244.77.16 (talk)
18:3418:34, 11 May 2011 diff hist +3‎ Dispom ‎ Undo revision 413 by 65.197.242.109 (talk)
18:3418:34, 11 May 2011 diff hist −4‎ Dispom ‎ Undo revision 425 by 12.3.144.12 (talk)
18:3418:34, 11 May 2011 diff hist +4‎ Dispom ‎ Undo revision 429 by 194.59.188.230 (talk)
18:3218:32, 11 May 2011 diff hist +3,895‎ Performing a 10-fold cross validation ‎ Undo revision 386 by 59.165.249.102 (talk)
18:3118:31, 11 May 2011 diff hist −33‎ Performing a 10-fold cross validation ‎ Undo revision 393 by 175.41.247.122 (talk)
18:2918:29, 11 May 2011 diff hist +1,943‎ DSHMM ‎ Undo revision 407 by 89.16.225.148 (talk)
18:2518:25, 11 May 2011 diff hist +1,082‎ m FAQs ‎ Reverted edits by 193.93.134.132 (talk) to last revision by Keilwagen
18:2318:23, 11 May 2011 diff hist +2,858‎ m Version history ‎ Reverted edits by 87.207.205.18 (talk) to last revision by Grau
18:2218:22, 11 May 2011 diff hist +1,800‎ Getting started ‎ Undo revision 387 by 216.58.41.195 (talk)
18:2218:22, 11 May 2011 diff hist −15‎ Getting started ‎ Undo revision 388 by 220.100.109.134 (talk)
18:2218:22, 11 May 2011 diff hist +10‎ Getting started ‎ Undo revision 415 by 133.50.212.25 (talk)
18:1918:19, 11 May 2011 diff hist +4,940‎ Downloads ‎ Undo revision 411 by 210.88.61.50 (talk)
18:1918:19, 11 May 2011 diff hist −8‎ Downloads ‎ Undo revision 419 by 71.5.32.3 (talk)
18:1918:19, 11 May 2011 diff hist +12‎ Downloads ‎ Undo revision 423 by 206.221.219.98 (talk)
18:1818:18, 11 May 2011 diff hist −20‎ Downloads ‎ Undo revision 428 by 24.173.94.2 (talk)
18:1418:14, 11 May 2011 diff hist +1,706‎ Main Page ‎ Undo revision 406 by 87.139.210.237 (talk)
18:1418:14, 11 May 2011 diff hist +548‎ m Main Page ‎ Reverted edits by 188.121.37.187 (talk) to last revision by 87.139.210.237

08:5908:59, 19 April 2011 diff hist +1‎ Projects ‎No edit summary
08:5808:58, 19 April 2011 diff hist +19‎ N SHMM ‎ SHMM moved to DSHMM
08:5808:58, 19 April 2011 diff hist 0‎ m DSHMM ‎ SHMM moved to DSHMM

12:5112:51, 11 March 2011 diff hist −1‎ m Dispom ‎ →‎Download

12:3212:32, 10 March 2011 diff hist +152‎ Dispom ‎ →‎Download

22:3622:36, 7 March 2011 diff hist +1‎ m Dispom ‎ →‎Start instructions
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19:3719:37, 8 February 2011 diff hist +3,498‎ N Dream5 ‎ New page: __NOTOC__ by Jan Grau, Stefan Posch, Ivo Grosse, and Jens Keilwagen. == Description == === Motivation === Protein binding microarrays (PBMs) are valuable for elucidating the binding affin...

21:4821:48, 31 December 2010 diff hist 0‎ Getting started ‎ →‎Basic Requirements
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21:1621:16, 31 December 2010 diff hist 0‎ Downloads ‎ →‎Requirements
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12:4912:49, 16 December 2010 diff hist +248‎ DSHMM ‎ →‎Download

16:2916:29, 21 September 2010 diff hist +916‎ MiRNAs ‎ →‎Graphical representation of learned models current
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14:3214:32, 13 August 2010 diff hist −2‎ m MiRNAs ‎ →‎Abstract
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16:0216:02, 1 July 2010 diff hist +1,242‎ N MiRNAs ‎ New page:  = Predicting miRNA targets utilizing an extended profile HMM = Jan Grau, Daniel Arend, Ivo Grosse, Artemis G. Hatzigeorgiou, Jens Keilwagen, Manolis Maragkakis, Claus Wein...

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14:5114:51, 7 September 2008 diff hist +46‎ N Version history ‎ New page: The first version of Jstacs has been released.
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14:3614:36, 7 September 2008 diff hist +1,600‎ N Saving and loading a model ‎ New page: <source lang="java5"> //create a DNA-alphabet AlphabetContainer container = new AlphabetContainer( new DNAAlphabet() ); //the length of our input sequences int length = 7; //create a Sam...
14:3114:31, 7 September 2008 diff hist +1,435‎ N Training a classifier and classifying new sequences ‎ New page: <source lang="java5"> //create a DNA-alphabet AlphabetContainer container = new AlphabetContainer( new DNAAlphabet() ); //the length of our input sequences int length = 7; //create a Sam...
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14:1314:13, 7 September 2008 diff hist +1,206‎ N Loading data ‎ New page: '''Loading DNA-sequences from a plain text file:''' <source lang="java"> //create a DNA-alphabet AlphabetContainer container = new AlphabetContainer( new DNAAlphabet() ); //create a Sam...
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13:4113:41, 5 September 2008 diff hist +73‎ N MediaWiki:Disclaimerpage ‎ New page: http://www.disclaimer.de/disclaimer.htm?farbe=FFFFFF/000000/000000/000000
13:4013:40, 5 September 2008 diff hist +10‎ N MediaWiki:Disclaimers ‎ New page: Disclaimer
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20:0920:09, 4 September 2008 diff hist +4,115‎ N Implementation of a homogeneous Markov model of order 0 based on AbstractModel ‎ New page: <source lang="java"> import java.util.Arrays; import de.jstacs.NonParsableException; import de.jstacs.NotTrainedException; import de.jstacs.data.AlphabetContainer; import de.jstacs.data.S...
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19:3919:39, 4 September 2008 diff hist +845‎ N Using the REnvironment ‎ New page: <source lang="java"> REnvironment e = null; try { e = new REnvironment( server, "rserve", password ); System.out.println( "java: " + System.getProperty( "java.version" ) ); System.out....
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19:3819:38, 4 September 2008 diff hist +4,113‎ N Performing a 10-fold cross validation ‎ New page: <source lang="java"> //create a DNA-alphabet AlphabetContainer container = new AlphabetContainer( new DNAAlphabet() ); //the length of our input sequences int length = 7; //create a Sampl...
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17:4317:43, 4 September 2008 diff hist +454‎ N Imprint ‎ New page: Jstacs is a joint project of the Martin Luther University Halle-Wittenberg and the IPK Gatersleben. Redaktion: * Jens Keilwagen, IPK Gatersleben * Jan Grau, Martin-Luther-Universit...
17:4017:40, 4 September 2008 diff hist +7‎ N MediaWiki:Aboutpage ‎ New page: Imprint current
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17:1217:12, 1 September 2008 diff hist +42‎ N Downloads ‎ New page: == Binaries == == Sources == == API ==
15:3215:32, 1 September 2008 diff hist −1‎ Acknowledgements ‎No edit summary
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15:1215:12, 1 September 2008 diff hist +183‎ N Acknowledgements ‎ New page: * We thank the [http://www.eclipse.org eclipse] team for developing a wonderful IDE, which greatly accelerated the development of Jstacs. ==Libraries== ==Contributors== ==Funding==
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14:5614:56, 1 September 2008 diff hist +12‎ N Main Page ‎ New page: == Jstacs ==
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11:1111:11, 1 September 2008 diff hist +228‎ N MediaWiki:Sidebar ‎ Die Seite wurde neu angelegt: * navigation ** mainpage|mainpage ** portal-url|portal ** currentevents-url|currentevents ** recentchanges-url|recentchanges ** randompage-url|randompage ** helppage|he...

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