Version history: Difference between revisions
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''December 31, 2010:<br /> | ''December 31, 2010:<br /> | ||
Jstacs 1.4 released | Jstacs 1.4 released | ||
* added DincleotideProperty for computing properties like melting temperature, twist, or G/C content | * added [http://www.jstacs.de/api/de/jstacs/data/DinucleotideProperty.html DincleotideProperty] for computing properties like melting temperature, twist, or G/C content | ||
* support for multidimensional sequence data | * support for [http://www.jstacs.de/api/de/jstacs/data/sequences/MultiDimensionalDiscreteSequence.html multidimensional sequence data] | ||
* more widespread use of TerminationConditions | * more widespread use of [http://www.jstacs.de/api/de/jstacs/algorithms/optimization/termination/TerminationCondition.html TerminationConditions] | ||
* completely rewritten XMLParser | * completely rewritten [http://www.jstacs.de/api/de/jstacs/io/XMLParser.html XMLParser] | ||
* extension of motif discovery to weighted data | * extension of motif discovery to weighted data | ||
* OneSampleLogGenDisMixFunction for using the same Sample with different weights for the different classes | * [http://www.jstacs.de/api/de/jstacs/classifier/scoringFunctionBased/gendismix/OneSampleLogGenDisMixFunction.html OneSampleLogGenDisMixFunction] for using the same Sample with different weights for the different classes | ||
* Jstacs requires Java 1.6 now | * Jstacs requires Java 1.6 now | ||
Revision as of 21:42, 31 December 2010
December 31, 2010:
Jstacs 1.4 released
- added DincleotideProperty for computing properties like melting temperature, twist, or G/C content
- support for multidimensional sequence data
- more widespread use of TerminationConditions
- completely rewritten XMLParser
- extension of motif discovery to weighted data
- OneSampleLogGenDisMixFunction for using the same Sample with different weights for the different classes
- Jstacs requires Java 1.6 now
March 2, 2010:
Jstacs 1.3.1 released
- Partitioning of Samples including weights
- Release of Dispom (de-novo discovery of differentially abundant transcription factor binding sites including their positional preference)
- Several bugfixes
December 2, 2009:
Jstacs 1.3 released
- generalized termination of numerical optimization in de.jstacs.algorithms.optimization.termination
- Added a unified generative-discriminative learning principle in de.jstacs.classifier.scoringFunctionBased.gendismix
- Implemented a multi-threaded variant of MCL/MSP and GenDisMix in the LogGenDisMixFunction
- Added a convenience class DNASample for samples of DNA sequences
- Added the class ParameterSetTagger to use parameter sets in command line programs
- Several bugfixes
April 8, 2009:
Jstacs 1.2.2 released
- Bugfix-Release
February 19, 2009:
Jstacs 1.2.1 released
- Bugfix in EnumParameter
February 2, 2009:
Jstacs 1.2 released
- Bugfixes
- Discriminative de-novo motif discovery
- Transformed Dirichlet Prior for numerical optimization
October 29, 2008:
Jstacs 1.1 released
- Bugfixes
- Improved Javadoc
- De-novo motif discovery
September 8, 2008:
The first version of Jstacs has been released.
