Uses of Class
de.jstacs.algorithms.alignment.cost.AffineCosts

Packages that use AffineCosts

de.jstacs.algorithms.alignment.cost

Provides classes for cost functions used in alignments

Uses of AffineCosts in de.jstacs.algorithms.alignment.cost

Subclasses of AffineCosts in de.jstacs.algorithms.alignment.cost

class	MatrixCosts Class for matrix costs, i.e., the cost of any match/mismatch is stored in a matrix allowing a huge degree of freedom.
class	SimpleCosts Class for simple costs with costs mismatch for a mismatch, costs start to start a new gap, costs elong to elongate a gap by one position and costs of match for a match.