Uses of Class
de.jstacs.models.mixture.AbstractMixtureModel.Algorithm

Packages that use AbstractMixtureModel.Algorithm

de.jstacs.models.mixture	This package is the super package for any mixture model.
de.jstacs.models.mixture.motif

Uses of AbstractMixtureModel.Algorithm in de.jstacs.models.mixture

Fields in de.jstacs.models.mixture declared as AbstractMixtureModel.Algorithm

protected AbstractMixtureModel.Algorithm

AbstractMixtureModel.algorithm The type of algorithm.

Methods in de.jstacs.models.mixture that return AbstractMixtureModel.Algorithm

static AbstractMixtureModel.Algorithm	AbstractMixtureModel.Algorithm.valueOf(String name) Returns the enum constant of this type with the specified name.
static AbstractMixtureModel.Algorithm[]	AbstractMixtureModel.Algorithm.values() Returns an array containing the constants of this enum type, in the order they are declared.

Constructors in de.jstacs.models.mixture with parameters of type AbstractMixtureModel.Algorithm

AbstractMixtureModel(int length, Model[] models, boolean[] optimizeModel, int dimension, int starts, boolean estimateComponentProbs, double[] componentHyperParams, double[] weights, AbstractMixtureModel.Algorithm algorithm, double alpha, TerminationCondition tc, AbstractMixtureModel.Parameterization parametrization, int initialIteration, int stationaryIteration, BurnInTest burnInTest)
Creates a new AbstractMixtureModel.

MixtureModel(int length, Model[] models, int starts, boolean estimateComponentProbs, double[] componentHyperParams, double[] weights, AbstractMixtureModel.Algorithm algorithm, double alpha, TerminationCondition tc, AbstractMixtureModel.Parameterization parametrization, int initialIteration, int stationaryIteration, BurnInTest burnInTest)
Creates a new MixtureModel.

StrandModel(Model model, int starts, boolean estimateComponentProbs, double[] componentHyperParams, double forwardStrandProb, AbstractMixtureModel.Algorithm algorithm, double alpha, TerminationCondition tc, AbstractMixtureModel.Parameterization parametrization, int initialIteration, int stationaryIteration, BurnInTest burnInTest)
Creates a new StrandModel.

Uses of AbstractMixtureModel.Algorithm in de.jstacs.models.mixture.motif

Constructors in de.jstacs.models.mixture.motif with parameters of type AbstractMixtureModel.Algorithm

HiddenMotifMixture(Model[] models, boolean[] optimzeArray, int components, int starts, boolean estimateComponentProbs, double[] componentHyperParams, double[] weights, PositionPrior posPrior, AbstractMixtureModel.Algorithm algorithm, double alpha, TerminationCondition tc, AbstractMixtureModel.Parameterization parametrization, int initialIteration, int stationaryIteration, BurnInTest burnInTest)
Creates a new HiddenMotifMixture.

SingleHiddenMotifMixture(Model motif, Model bg, boolean trainOnlyMotifModel, int starts, double[] componentHyperParams, double[] weights, PositionPrior posPrior, AbstractMixtureModel.Algorithm algorithm, double alpha, TerminationCondition tc, AbstractMixtureModel.Parameterization parametrization, int initialIteration, int stationaryIteration, BurnInTest burnInTest)
Creates a new SingleHiddenMotifMixture.