Constant Field Values

Contents

• de.jstacs.*

de.jstacs.*

de.jstacs.algorithms.graphs.Chu_Liu_Edmonds

public static final byte	MAXIMALBRANCHING	0
public static final byte	MINIMALBRANCHING	1

de.jstacs.algorithms.optimization.Optimizer

public static final byte	CONJUGATE_GRADIENTS_FR	17
public static final byte	CONJUGATE_GRADIENTS_PRP	18
public static final byte	QUASI_NEWTON_BFGS	20
public static final byte	QUASI_NEWTON_DFP	19
public static final byte	STEEPEST_DESCENT	16

de.jstacs.classifiers.differentiableSequenceScoreBased.ScoreClassifier

public static final double

NOT_TRAINED_VALUE

0d/0d

de.jstacs.classifiers.differentiableSequenceScoreBased.gendismix.LearningPrinciple

public static final int	CONDITIONAL_LIKELIHOOD_INDEX	0
public static final int	LIKELIHOOD_INDEX	1
public static final int	PRIOR_INDEX	2

de.jstacs.classifiers.differentiableSequenceScoreBased.logPrior.LogPrior

public static final int

UNKNOWN

-1

de.jstacs.classifiers.performanceMeasures.PRCurve

public static final String

NAME

"Precision-Recall curve"

de.jstacs.classifiers.performanceMeasures.ROCCurve

public static final String

NAME

"Receiver Operating Characteristic curve"

de.jstacs.data.sequences.annotation.ReferenceSequenceAnnotation

public static final String

TYPE

"reference"

de.jstacs.io.AbstractStringExtractor

public static final char	FASTA	62
public static final char	USUALLY	35

de.jstacs.parameters.validation.Constraint

public static final int	EQUALS	1
public static final int	GEQ	5
public static final int	GT	3
public static final int	LEQ	4
public static final int	LT	2

de.jstacs.results.StorableResult

public static final byte	FALSE	0
public static final byte	NA	-1
public static final byte	TRUE	1

de.jstacs.sequenceScores.differentiable.DifferentiableSequenceScore

public static final int

UNKNOWN

-1

de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif.ExtendedZOOPSDiffSM

public static final boolean	CONTAINS_ALWAYS_A_MOTIF	true
public static final boolean	CONTAINS_SOMETIMES_A_MOTIF	false

de.jstacs.sequenceScores.statisticalModels.trainable.hmm.AbstractHMM

public static final String

START_NODE

"START"