Uses of Class
de.jstacs.data.sequences.annotation.LocatedSequenceAnnotationWithLength

Packages that use LocatedSequenceAnnotationWithLength

de.jstacs.data.sequences.annotation

Provides the facilities to annotate Sequences using a number of pre-defined annotation types, or additional implementations of the SequenceAnnotation class

Uses of LocatedSequenceAnnotationWithLength in de.jstacs.data.sequences.annotation

Subclasses of LocatedSequenceAnnotationWithLength in de.jstacs.data.sequences.annotation

class	IntronAnnotation Annotation class for an intron as defined by a donor and an acceptor splice site.
class	MotifAnnotation Class for a StrandedLocatedSequenceAnnotationWithLength that is a motif.
class	StrandedLocatedSequenceAnnotationWithLength Class for a SequenceAnnotation that has a position, a length and an orientation on the strand of a Sequence.

Methods in de.jstacs.data.sequences.annotation with parameters of type LocatedSequenceAnnotationWithLength

boolean

LocatedSequenceAnnotationWithLength.overlaps(LocatedSequenceAnnotationWithLength second) Returns true if this LocatedSequenceAnnotationWithLength overlaps with the location of second.