de.jstacs.motifDiscovery
Enum MotifDiscoverer.KindOfProfile

java.lang.Object
  java.lang.Enum<MotifDiscoverer.KindOfProfile>
      de.jstacs.motifDiscovery.MotifDiscoverer.KindOfProfile

All Implemented Interfaces:

Serializable, Comparable<MotifDiscoverer.KindOfProfile>

Enclosing interface:

MotifDiscoverer

public static enum MotifDiscoverer.KindOfProfile
extends Enum<MotifDiscoverer.KindOfProfile>

This enum can be used to determine which kind of profile should be returned.

See Also:

MotifDiscoverer.getProfileOfScoresFor(int, int, Sequence, int, KindOfProfile)

Enum Constant Summary

NORMALIZED_CONDITIONAL
The profile should return \log P(seq,pos|component,class).

UNNORMALIZED_CONDITIONAL
The profile should return \log Q(seq,pos|component,class).

UNNORMALIZED_JOINT
The profile should return \log Q(seq,pos,component|class).

Method Summary

static MotifDiscoverer.KindOfProfile	valueOf(String name) Returns the enum constant of this type with the specified name.
static MotifDiscoverer.KindOfProfile[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

UNNORMALIZED_JOINT

public static final MotifDiscoverer.KindOfProfile UNNORMALIZED_JOINT

The profile should return \log Q(seq,pos,component|class).

NORMALIZED_CONDITIONAL

public static final MotifDiscoverer.KindOfProfile NORMALIZED_CONDITIONAL

The profile should return \log P(seq,pos|component,class).

UNNORMALIZED_CONDITIONAL

public static final MotifDiscoverer.KindOfProfile UNNORMALIZED_CONDITIONAL

The profile should return \log Q(seq,pos|component,class).

Method Detail

values

public static MotifDiscoverer.KindOfProfile[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (MotifDiscoverer.KindOfProfile c : MotifDiscoverer.KindOfProfile.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static MotifDiscoverer.KindOfProfile valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null