Uses of Class
de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif.DurationDiffSM

Packages that use DurationDiffSM

de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels	Provides DifferentiableStatisticalModels that are directed graphical models.
de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif

Uses of DurationDiffSM in de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels

Constructors in de.jstacs.sequenceScores.statisticalModels.differentiable.directedGraphicalModels with parameters of type DurationDiffSM

MarkovModelDiffSM(AlphabetContainer alphabet, int length, double ess, boolean plugInParameters, InhomogeneousMarkov structureMeasure, DurationDiffSM lengthPenalty)
This constructor creates an instance with an prior for the modeled length.

MarkovModelDiffSM(AlphabetContainer alphabet, int length, double ess, boolean plugInParameters, int order, DurationDiffSM lengthPenalty)
This constructor creates an instance with an prior for the modeled length.

Uses of DurationDiffSM in de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif

Subclasses of DurationDiffSM in de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif

class	MixtureDurationDiffSM This class implements a mixture of DurationDiffSMs.
class	SkewNormalLikeDurationDiffSM This class implements a skew normal like discrete truncated distribution.
class	UniformDurationDiffSM This scoring function implements a uniform distribution for positions.

Constructors in de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif with parameters of type DurationDiffSM

ExtendedZOOPSDiffSM(boolean type, int length, int starts, boolean plugIn, HomogeneousDiffSM bg, DifferentiableStatisticalModel[] motif, DurationDiffSM[] posPrior, boolean plugInBg)
This constructor creates an instance of ExtendedZOOPSDiffSM that allows to have one site of the specified motifs in a Sequence.

ExtendedZOOPSDiffSM(boolean type, int length, int starts, boolean plugIn, HomogeneousDiffSM bg, DifferentiableStatisticalModel motif, DurationDiffSM posPrior, boolean plugInBg)
This constructor creates an instance of ExtendedZOOPSDiffSM that is either an OOPS or a ZOOPS model depending on the chosen type.

MixtureDurationDiffSM(int starts, DurationDiffSM... function)
The main constructor of a MixtureDurationDiffSM.