de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models
Enum SamplingHigherOrderHMM.ViterbiComputation

java.lang.Object
  java.lang.Enum<SamplingHigherOrderHMM.ViterbiComputation>
      de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models.SamplingHigherOrderHMM.ViterbiComputation

All Implemented Interfaces:

Serializable, Comparable<SamplingHigherOrderHMM.ViterbiComputation>

Enclosing class:

SamplingHigherOrderHMM

public static enum SamplingHigherOrderHMM.ViterbiComputation
extends Enum<SamplingHigherOrderHMM.ViterbiComputation>

Emumeration of all possible Viterbi-Path methods

Enum Constant Summary

MAX
standard viterbi path

MAX_AND_SAMPLING
best of standard viterbi path and sampled path

MAX_AND_SAMPLING_GAMMA
best of standard viterbi path and sampled path scored with gamma score (independent from parameters)

MAX_GAMMA
standard viterbi with gamma scoring (independent from parameters)

SAMPLING
draw paths and score with standard viterbi score

SAMPLING_GAMMA
draw paths and score with gamma score (independent from parameters)

Method Summary

static SamplingHigherOrderHMM.ViterbiComputation	valueOf(String name) Returns the enum constant of this type with the specified name.
static SamplingHigherOrderHMM.ViterbiComputation[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

MAX

public static final SamplingHigherOrderHMM.ViterbiComputation MAX

standard viterbi path

MAX_GAMMA

public static final SamplingHigherOrderHMM.ViterbiComputation MAX_GAMMA

standard viterbi with gamma scoring (independent from parameters)

SAMPLING

public static final SamplingHigherOrderHMM.ViterbiComputation SAMPLING

draw paths and score with standard viterbi score

SAMPLING_GAMMA

public static final SamplingHigherOrderHMM.ViterbiComputation SAMPLING_GAMMA

draw paths and score with gamma score (independent from parameters)

MAX_AND_SAMPLING

public static final SamplingHigherOrderHMM.ViterbiComputation MAX_AND_SAMPLING

best of standard viterbi path and sampled path

MAX_AND_SAMPLING_GAMMA

public static final SamplingHigherOrderHMM.ViterbiComputation MAX_AND_SAMPLING_GAMMA

best of standard viterbi path and sampled path scored with gamma score (independent from parameters)

Method Detail

values

public static SamplingHigherOrderHMM.ViterbiComputation[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (SamplingHigherOrderHMM.ViterbiComputation c : SamplingHigherOrderHMM.ViterbiComputation.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static SamplingHigherOrderHMM.ViterbiComputation valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null