Constant Field Values

Contents

• de.jstacs.*

de.jstacs.*

de.jstacs.algorithms.graphs.Chu_Liu_Edmonds

Modifier and Type	Constant Field	Value
public static final byte	MAXIMALBRANCHING	0
public static final byte	MINIMALBRANCHING	1

de.jstacs.algorithms.optimization.Optimizer

Modifier and Type	Constant Field	Value
public static final byte	CONJUGATE_GRADIENTS_FR	17
public static final byte	CONJUGATE_GRADIENTS_PRP	18
public static final byte	QUASI_NEWTON_BFGS	20
public static final byte	QUASI_NEWTON_DFP	19
public static final byte	STEEPEST_DESCENT	16

de.jstacs.classifiers.differentiableSequenceScoreBased.ScoreClassifier

Modifier and Type	Constant Field	Value
public static final double	NOT_TRAINED_VALUE	0d/0d

de.jstacs.classifiers.differentiableSequenceScoreBased.gendismix.LearningPrinciple

Modifier and Type	Constant Field	Value
public static final int	CONDITIONAL_LIKELIHOOD_INDEX	0
public static final int	LIKELIHOOD_INDEX	1
public static final int	PRIOR_INDEX	2

de.jstacs.classifiers.differentiableSequenceScoreBased.logPrior.LogPrior

Modifier and Type	Constant Field	Value
public static final int	UNKNOWN	-1

de.jstacs.classifiers.performanceMeasures.PRCurve

Modifier and Type	Constant Field	Value
public static final String	NAME	"Precision-Recall curve"

de.jstacs.classifiers.performanceMeasures.ROCCurve

Modifier and Type	Constant Field	Value
public static final String	NAME	"Receiver Operating Characteristic curve"

de.jstacs.data.bioJava.BioJavaAdapter

Modifier and Type	Constant Field	Value
public static final String	ANNOTATION_ID	"BJRSA"

de.jstacs.data.sequences.annotation.ReferenceSequenceAnnotation

Modifier and Type	Constant Field	Value
public static final String	TYPE	"reference"

de.jstacs.io.AbstractStringExtractor

Modifier and Type	Constant Field	Value
public static final char	FASTA	62
public static final char	USUALLY	35

de.jstacs.parameters.validation.Constraint

Modifier and Type	Constant Field	Value
public static final int	EQUALS	1
public static final int	GEQ	5
public static final int	GT	3
public static final int	LEQ	4
public static final int	LT	2

de.jstacs.results.StorableResult

Modifier and Type	Constant Field	Value
public static final byte	FALSE	0
public static final byte	NA	-1
public static final byte	TRUE	1

de.jstacs.sequenceScores.differentiable.DifferentiableSequenceScore

Modifier and Type	Constant Field	Value
public static final int	UNKNOWN	-1

de.jstacs.sequenceScores.statisticalModels.differentiable.mixture.motif.ExtendedZOOPSDiffSM

Modifier and Type	Constant Field	Value
public static final boolean	CONTAINS_ALWAYS_A_MOTIF	true
public static final boolean	CONTAINS_SOMETIMES_A_MOTIF	false

de.jstacs.sequenceScores.statisticalModels.trainable.discrete.inhomogeneous.MEMTools

Modifier and Type	Constant Field	Value
public static final byte	BGIS	15
public static final byte	BGIS_P	12
public static final byte	GIS	13
protected static final double	LIN_EPS	1.0E9
public static final byte	SGIS	14
public static final byte	SGIS_P	11
protected static final double	STARTDISTANCE	1.0

de.jstacs.sequenceScores.statisticalModels.trainable.hmm.AbstractHMM

Modifier and Type	Constant Field	Value
public static final String	START_NODE	"START"