public abstract class MaximumNumericalTwoClassMeasure extends AbstractNumericalTwoClassPerformanceMeasure
ParameterSet.ParameterListerrorMessage, parameters, parent| Modifier | Constructor and Description |
|---|---|
protected |
MaximumNumericalTwoClassMeasure()
Constructs a new instance of the performance measure
MaximumNumericalTwoClassMeasure. |
protected |
MaximumNumericalTwoClassMeasure(StringBuffer xml)
The standard constructor for the interface
Storable. |
| Modifier and Type | Method and Description |
|---|---|
NumericalResultSet |
compute(double[] sortedScoresClass0,
double[] weightsClass0,
double[] sortedScoresClass1,
double[] weightsClass1)
This method allows to compute the performance measure of given sorted score ratios.
|
protected abstract double |
getMeasure(double tp,
double fp,
double fn,
double tn)
This measure compute the measure for a given confusion matrix
|
protected abstract String |
getMeasureName()
This method returns a short name of the measure without any parameters.
|
String |
getName()
The method returns the name of the performance measure.
|
protected abstract String |
getSpecificName()
This method returns a specific name of the measure including any parameters.
|
compute, compute, computegetAllowedNumberOfClassesfindSplitIndex, findThreshold, getCollectionOfAllMeasures, getWeight, simpleWeightsclone, fromGalaxy, fromXML, getAllParameterNames, getComment, getComment, getErrorMessage, getIndex, getName, getName, getNumberOfParameters, getParameterAt, getParameterForName, getParent, hasDefaultOrIsSet, initParameterList, initParameterList, isAtomic, isComparable, parametersLoaded, reset, setParent, toGalaxy, toXMLequals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, waitgetAllowedNumberOfClassesprotected MaximumNumericalTwoClassMeasure()
MaximumNumericalTwoClassMeasure.protected MaximumNumericalTwoClassMeasure(StringBuffer xml) throws NonParsableException
Storable.
Constructs a MaximumNumericalTwoClassMeasure out of an XML representation.xml - the XML representation as StringBufferNonParsableException - if the MaximumFMeasure could not be reconstructed out of
the StringBuffer xmlpublic final String getName()
PerformanceMeasuregetName in interface PerformanceMeasuregetName in class AbstractPerformanceMeasureprotected abstract String getMeasureName()
protected abstract String getSpecificName()
protected abstract double getMeasure(double tp,
double fp,
double fn,
double tn)
tp - true positivesfp - false positivesfn - false negativestn - true negativepublic NumericalResultSet compute(double[] sortedScoresClass0, double[] weightsClass0, double[] sortedScoresClass1, double[] weightsClass1)
NumericalPerformanceMeasurecompute in interface NumericalPerformanceMeasurecompute in interface PerformanceMeasurecompute in class AbstractNumericalTwoClassPerformanceMeasuresortedScoresClass0 - the sorted score ratios of class 0weightsClass0 - the weights of the sequences of class 0 sorted along with the scores sortedScoresClass0sortedScoresClass1 - the sorted score ratios of class 1weightsClass1 - the weights of the sequences of class 1 sorted along with the scores sortedScoresClass1ToolBox.sortAlongWith(double[], double[][])