de.jstacs.data.alphabets

Class ProteinAlphabet.ProteinAlphabetParameterSet

java.lang.Object

de.jstacs.parameters.ParameterSet

de.jstacs.parameters.InstanceParameterSet<T>

de.jstacs.data.alphabets.Alphabet.AlphabetParameterSet<ProteinAlphabet>

de.jstacs.data.alphabets.ProteinAlphabet.ProteinAlphabetParameterSet

All Implemented Interfaces:

GalaxyConvertible, Singleton, Storable, Cloneable

Enclosing class:

ProteinAlphabet

public static final class ProteinAlphabet.ProteinAlphabetParameterSet
extends Alphabet.AlphabetParameterSet<ProteinAlphabet>
implements Singleton

The parameter set for a ProteinAlphabet.

Author:

Jens Keilwagen

Nested Class Summary

Nested classes/interfaces inherited from class de.jstacs.parameters.ParameterSet

ParameterSet.ParameterList

Nested classes/interfaces inherited from interface de.jstacs.Singleton

Singleton.SingletonHandler

Field Summary

Fields

Modifier and Type	Field and Description
static ProteinAlphabet.ProteinAlphabetParameterSet	SINGLETON The only instance of this class.

Fields inherited from class de.jstacs.parameters.ParameterSet

errorMessage, parameters, parent

Method Summary

Methods

Modifier and Type	Method and Description
String	getInstanceComment() Returns a comment (a textual description) of the class that can be constructed using this ParameterSet.

Methods inherited from class de.jstacs.data.alphabets.Alphabet.AlphabetParameterSet

clone, getInstanceName

Methods inherited from class de.jstacs.parameters.InstanceParameterSet

fromXML, getInstance, getInstanceClass, toXML

Methods inherited from class de.jstacs.parameters.ParameterSet

fromGalaxy, getAllParameterNames, getComment, getComment, getErrorMessage, getIndex, getName, getName, getNumberOfParameters, getParameterAt, getParameterForName, getParent, hasDefaultOrIsSet, initParameterList, initParameterList, isAtomic, isComparable, parametersLoaded, reset, setParent, toGalaxy

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

SINGLETON

public static final ProteinAlphabet.ProteinAlphabetParameterSet SINGLETON

The only instance of this class.

See Also:

Singleton

Method Detail

getInstanceComment

public String getInstanceComment()

Description copied from class: InstanceParameterSet

Returns a comment (a textual description) of the class that can be constructed using this ParameterSet.

Specified by:

getInstanceComment in class InstanceParameterSet<ProteinAlphabet>

Returns:

the comment of the class