de.jstacs.data.bioJava

Class SimpleSequenceIterator

java.lang.Object

de.jstacs.data.bioJava.SimpleSequenceIterator

All Implemented Interfaces:

SequenceIterator

public class SimpleSequenceIterator
extends Object
implements SequenceIterator

Class that implements the SequenceIterator interface of BioJava in a simple way, backed by an array of Sequences.

Author:

Jan Grau

Constructor Summary

Constructors

Constructor and Description
SimpleSequenceIterator(Sequence... seqs) Creates a new SimpleSequenceIterator from an array of Sequences.

Method Summary

Methods

Modifier and Type	Method and Description
boolean	hasNext()
Sequence	nextSequence()
void	reset() Provides the possibility to reset and afterwards reuse this iterator.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SimpleSequenceIterator

public SimpleSequenceIterator(Sequence... seqs)

Creates a new SimpleSequenceIterator from an array of Sequences.

Parameters:

seqs - the array of Sequences

Method Detail

hasNext

public boolean hasNext()

Specified by:

hasNext in interface SequenceIterator

nextSequence

public Sequence nextSequence()
                      throws NoSuchElementException,
                             BioException

Specified by:

nextSequence in interface SequenceIterator

Throws:

NoSuchElementException

BioException

reset

public void reset()

Provides the possibility to reset and afterwards reuse this iterator.