Uses of Class
de.jstacs.data.sequences.ArbitrarySequence

Packages that use ArbitrarySequence

Package	Description
de.jstacs.data	Provides classes for the representation of data. The base classes to represent data are Alphabet and AlphabetContainer for representing alphabets, Sequence and its sub-classes to represent continuous and discrete sequences, and DataSet to represent data sets comprising a set of sequences.
de.jstacs.data.sequences	Provides classes for representing sequences. The implementations of sequences currently include DiscreteSequences prepared for alphabets of different sizes, and ArbitrarySequences that may contain continuous values as well. As sub-package provides the facilities to annotate Sequences.

Uses of ArbitrarySequence in de.jstacs.data

Methods in de.jstacs.data that return ArbitrarySequence

Modifier and Type	Method and Description
ArbitrarySequence	DinucleotideProperty.getPropertyAsSequence(Sequence original) Computes this dinucleotide property for all overlapping twomers in original and returns the result as a Sequence of length original.getLength()-1
ArbitrarySequence	DinucleotideProperty.getPropertyAsSequence(Sequence original, DinucleotideProperty.Smoothing smoothing) Computes this dinucleotide property for all overlapping twomers in original, smoothes the result using smoothing, and returns the smoothed property as a Sequence.

Uses of ArbitrarySequence in de.jstacs.data.sequences

Methods in de.jstacs.data.sequences that return ArbitrarySequence

Modifier and Type	Method and Description
protected ArbitrarySequence	ArbitrarySequence.flatCloneWithoutAnnotation()

Constructors in de.jstacs.data.sequences with parameters of type ArbitrarySequence

Constructor and Description
MultiDimensionalArbitrarySequence(SequenceAnnotation[] seqAn, ArbitrarySequence... sequence) This constructor creates an MultiDimensionalDiscreteSequence from a set of individual Sequences.