public static enum SignificantMotifOccurrencesFinder.RandomSeqType extends Enum<SignificantMotifOccurrencesFinder.RandomSeqType>
Enum Constant and Description |
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BACKGROUND
A enum constant that indicates to use the a background set to determine the significance level.
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hMM0
A enum constant that indicates to use sequences drawn from a homogeneous Markov model of order 0 to determine the significance level.
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hMM1
A enum constant that indicates to use sequences drawn from a homogeneous Markov model of order 1 to determine the significance level.
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hMM2
A enum constant that indicates to use sequences drawn from a homogeneous Markov model of order 3 to determine the significance level.
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hMM3
A enum constant that indicates to use sequences drawn from a homogeneous Markov model of order 3 to determine the significance level.
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hMM4
A enum constant that indicates to use sequences drawn from a homogeneous Markov model of order 4 to determine the significance level.
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hMM5
A enum constant that indicates to use sequences drawn from a homogeneous Markov model of order 5 to determine the significance level.
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PERMUTED
A enum constant that indicates to use permuted instances of the sequence to determine the significance level.
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Modifier and Type | Method and Description |
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int |
getOrder()
This method returns the Markov order.
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static SignificantMotifOccurrencesFinder.RandomSeqType |
valueOf(String name)
Returns the enum constant of this type with the specified name.
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static SignificantMotifOccurrencesFinder.RandomSeqType[] |
values()
Returns an array containing the constants of this enum type, in
the order they are declared.
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public static final SignificantMotifOccurrencesFinder.RandomSeqType BACKGROUND
public static final SignificantMotifOccurrencesFinder.RandomSeqType PERMUTED
public static final SignificantMotifOccurrencesFinder.RandomSeqType hMM0
public static final SignificantMotifOccurrencesFinder.RandomSeqType hMM1
public static final SignificantMotifOccurrencesFinder.RandomSeqType hMM2
public static final SignificantMotifOccurrencesFinder.RandomSeqType hMM3
public static final SignificantMotifOccurrencesFinder.RandomSeqType hMM4
public static final SignificantMotifOccurrencesFinder.RandomSeqType hMM5
public static SignificantMotifOccurrencesFinder.RandomSeqType[] values()
for (SignificantMotifOccurrencesFinder.RandomSeqType c : SignificantMotifOccurrencesFinder.RandomSeqType.values()) System.out.println(c);
public static SignificantMotifOccurrencesFinder.RandomSeqType valueOf(String name)
name
- the name of the enum constant to be returned.IllegalArgumentException
- if this enum type has no constant with the specified nameNullPointerException
- if the argument is nullpublic int getOrder()