de.jstacs.motifDiscovery.history

Class NoRevertHistory

java.lang.Object

de.jstacs.motifDiscovery.history.NoRevertHistory

All Implemented Interfaces:

History, Storable, Cloneable

public class NoRevertHistory
extends Object
implements History

This class implements a history that allows operations, that are not a priorily forbidden and do not create a configuration that has already be considered. If not a priorily forbidden shrink operations are always allowed.
This history may not cause an termination of the motif discovery.

Author:

Jan Grau, Jens Keilwagen

See Also:

CappedHistory

Constructor Summary

Constructors

Constructor and Description
NoRevertHistory() This constructor creates an instance that allows to shift shrink and expand the motif.
NoRevertHistory(boolean allowShift, boolean allowShrink, boolean allowExpand) This constructor creates an instance with user specified allowed operations.
NoRevertHistory(StringBuffer xml) This is the constructor for the interface Storable.

Method Summary

Methods

Modifier and Type	Method and Description
void	clear() This method clears the history, i.e.
NoRevertHistory	clone() This method returns a deep copy of the instance
boolean	operationAllowed(int... op) Returns true if the specified operation is allowed, i.e.
void	operationPerfomed(int... op) This method puts an operation to the history.
StringBuffer	toXML() This method returns an XML representation as StringBuffer of an instance of the implementing class.

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

NoRevertHistory

public NoRevertHistory()

This constructor creates an instance that allows to shift shrink and expand the motif.

NoRevertHistory

public NoRevertHistory(boolean allowShift,
               boolean allowShrink,
               boolean allowExpand)

This constructor creates an instance with user specified allowed operations.

Parameters:

allowShift - whether it is allowed to shift the motif

allowShrink - whether it is allowed to shrink the motif

allowExpand - whether it is allowed to expand the motif

NoRevertHistory

public NoRevertHistory(StringBuffer xml)
                throws NonParsableException

This is the constructor for the interface Storable.

Parameters:

xml - the XML representation as StringBuffer

Throws:

NonParsableException - if the XML representation could not be parsed

Method Detail

toXML

public StringBuffer toXML()

Description copied from interface: Storable

This method returns an XML representation as StringBuffer of an instance of the implementing class.

Specified by:

toXML in interface Storable

Returns:

the XML representation

clone

public NoRevertHistory clone()
                      throws CloneNotSupportedException

Description copied from interface: History

This method returns a deep copy of the instance

Specified by:

clone in interface History

Overrides:

clone in class Object

Returns:

a deep copy

Throws:

CloneNotSupportedException - if not possible

See Also:

Cloneable, Object.clone()

clear

public void clear()

Description copied from interface: History

This method clears the history, i.e. it removes all operations from the history.

Specified by:

clear in interface History

operationAllowed

public boolean operationAllowed(int... op)

Description copied from interface: History

Returns true if the specified operation is allowed, i.e. it does not conflict with any operation from the history.

Specified by:

operationAllowed in interface History

Parameters:

op - the operation to be tested

Returns:

true if the specified operation is allowed

operationPerfomed

public void operationPerfomed(int... op)

Description copied from interface: History

This method puts an operation to the history.

Specified by:

operationPerfomed in interface History

Parameters:

op - the performed operation