| Package | Description |
|---|---|
| de.jstacs.sequenceScores.statisticalModels.trainable.hmm.models |
The package provides different implementations of hidden Markov models based on
AbstractHMM. |
| de.jstacs.sequenceScores.statisticalModels.trainable.hmm.states.emissions.discrete |
| Class and Description |
|---|
| PhyloDiscreteEmission
Phylogenetic discrete emission
This class uses a phylogenetic tree to describe multidimensional data
It implements Felsensteins model for nucleotide substitution (F81)
|
| Class and Description |
|---|
| AbstractConditionalDiscreteEmission
The abstract super class of discrete emissions.
|
| DiscreteEmission
This class implements a simple discrete emission without any condition.
|
| PhyloDiscreteEmission
Phylogenetic discrete emission
This class uses a phylogenetic tree to describe multidimensional data
It implements Felsensteins model for nucleotide substitution (F81)
|