Uses of Package
de.jstacs.algorithms.alignment.cost

Packages that use de.jstacs.algorithms.alignment.cost

Package	Description
de.jstacs.algorithms.alignment	Provides classes for alignments.
de.jstacs.algorithms.alignment.cost	Provides classes for cost functions used in alignments.

Classes in de.jstacs.algorithms.alignment.cost used by de.jstacs.algorithms.alignment

Class and Description
AffineCosts This class implements affine gap costs, i.e., the costs for starting a new gap are given by start, and the costs for elongating a gap by one position are given by elong.
Costs The general interface for the costs of an alignment.

Classes in de.jstacs.algorithms.alignment.cost used by de.jstacs.algorithms.alignment.cost

Class and Description
Costs The general interface for the costs of an alignment.