Package | Description |
---|---|
de.jstacs |
This package is the root package for the most and important packages.
|
de.jstacs.classifiers |
This package provides the framework for any classifier.
|
de.jstacs.parameters |
This package provides classes for parameters that establish a general convention for the description of parameters
as defined in the
Parameter -interface. |
de.jstacs.results |
This package provides classes for results and sets of results.
|
de.jstacs.tools | |
de.jstacs.tools.ui.galaxy |
Modifier and Type | Class and Description |
---|---|
class |
AnnotatedEntityList<T extends AnnotatedEntity>
Class for a list of
AnnotatedEntity s where
elements can be accessed either by index or by the name
of the AnnotatedEntity . |
Modifier and Type | Method and Description |
---|---|
<E extends T> |
AnnotatedEntityList.toArray(E[] ar)
Returns the
AnnotatedEntity s in this list
as an array. |
Modifier and Type | Method and Description |
---|---|
void |
AnnotatedEntityList.add(T... entities)
Adds all
AnnotatedEntity s in entities
to the list. |
<E extends T> |
AnnotatedEntityList.toArray(E[] ar)
Returns the
AnnotatedEntity s in this list
as an array. |
Modifier and Type | Class and Description |
---|---|
static class |
AbstractScoreBasedClassifier.DoubleTableResult
This class is for
Result s given as a table of double
s. |
Modifier and Type | Class and Description |
---|---|
class |
AbstractSelectionParameter
Class for a collection parameter, i.e.
|
class |
EnumParameter
This class implements a
SelectionParameter based on an Enum . |
class |
FileParameter
Class for a
Parameter that represents a local file. |
class |
MultiSelectionParameter
Class for a
Parameter that provides a collection of possible values. |
class |
Parameter
Abstract class for a parameter that shall be used as the parameter of some
method, constructor, etc.
|
class |
ParameterSetContainer
Class for a
ParameterSetContainer that contains a
ParameterSet as value. |
class |
RangeParameter
Class for a parameter wrapper that allows
SimpleParameter s to be set
to a set of values.These values may be given either as a list of values separated by spaces, as a range between a first and a last value with a given number of steps between these values, or a single value. |
class |
SelectionParameter
Class for a collection parameter, i.e.
|
class |
SimpleParameter
Class for a "simple" parameter.
|
Modifier and Type | Class and Description |
---|---|
class |
CategoricalResult
A class for categorical results (i.e.
|
class |
DataSetResult
|
class |
ImageResult
A class for results that are images of the PNG format.
|
class |
ListResult
|
class |
NumericalResult
Class for numerical
Result values. |
class |
PlotGeneratorResult
Class for a
Result that may be used to generate plots for different output formats using
GraphicsAdaptor sub-classes. |
class |
Result
The abstract class for any result.
|
class |
ResultSetResult
|
class |
SimpleResult
|
class |
StorableResult
|
class |
TextResult
Class for a result that is basically a text file (or its contents).
|
Modifier and Type | Class and Description |
---|---|
class |
DataColumnParameter
SimpleParameter that represents a data column parameter in Galaxy and JstacsFX. |
class |
ToolResult
Class for the results of a
JstacsTool . |
Modifier and Type | Class and Description |
---|---|
static class |
GalaxyAdaptor.FileResult
Result for files that are results of some computation. |
static class |
GalaxyAdaptor.HeadResult
Class for a result that is basically a
CategoricalResult ,
but has its own name for checking purposes. |
static class |
GalaxyAdaptor.LineBasedResult
Superclass for all
Result that may be saved line by line. |
static class |
GalaxyAdaptor.LinkedImageResult
Class for an
ImageResult that is linked to a file that can be downloaded. |
class |
MultilineSimpleParameter
An extension of
SimpleParameter that renders as a textarea in Galaxy, which is only suitable for DataType.STRING s. |